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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tako4g04308 ATGTGGGATGGAGCTGGGTCTATCATATATACCCGACGAGGTCGATACGTGAACTCTCACGCAAGAAAACCAAAAATGGAAGAAACTCCGACAACCAACATCGGCGGAGACGCCCATCAGGAAATGATCGCAGCATTCTCAGAGATAACTTCTGCTTCCAAAGAAGAAGCCTCATTCTTCCTCGAATCGCACAACTTCGATCTCGATTCCGCCATCTCCACCTTCTTCGAAAACGCTGCTGTCGCAGAAGAGGCTCCTATCGCTGCCTTGCCTGCCCGAAACCCTAACCGTCCTTCCGATACACATTCCCCTTCGTTTTCTCCATCATCTTCCCCGTCTCGCTCCCGATCAGCATCCCCACCGCCTTCTCTCGGTTTACAACAAATGGCCGGTGGCAATCCTTACAATCTACGATCCAGGAATCCCGCTACTGATAAGAAGCCATCAGGTAGTCGGTCCACTGGACGCATACGGACTTTCGCAGATCTGAATCGACCGGATGATGACTCAGGAAGTGACTCGGACGAGCCTCAGGAGTATTATACTGGTGGTGAAAAGAGTGGGATGCTTGTTCAAGATCCAACAAGGGCGAATGATGTGGAATCATTGTTCAATCAAGCCAGACAAGCAGGAGCTGAAGAAGGAACTCTCGAGCAACTTCAACCATCTTCAAGCACCCGAAGCTTTGCCGGAAGAGGAAGATTACTATCTGGAGAGACAACATCAGCTACTCCTCAACAATCCGAACCTGATGTTCACACACACACCATCACTTTCTGGACCAACGGTTTCACTGTAAACGATGGTCCTCTAAGGAGACTCGATGACCCCCAAAATGCATCTTTCTTGGAGGAAATCCGAGTGTCCAGAAGAGCTTAG 879 49.72 MWDGAGSIIYTRRGRYVNSHARKPKMEETPTTNIGGDAHQEMIAAFSEITSASKEEASFFLESHNFDLDSAISTFFENAAVAEEAPIAALPARNPNRPSDTHSPSFSPSSSPSRSRSASPPPSLGLQQMAGGNPYNLRSRNPATDKKPSGSRSTGRIRTFADLNRPDDDSGSDSDEPQEYYTGGEKSGMLVQDPTRANDVESLFNQARQAGAEEGTLEQLQPSSSTRSFAGRGRLLSGETTSATPQQSEPDVHTHTITFWTNGFTVNDGPLRRLDDPQNASFLEEIRVSRRA 292
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tako4g04308 292 Pfam SEP domain 257 289 IPR012989 -
Tako4g04308 292 SUPERFAMILY NSFL1 (p97 ATPase) cofactor p47, SEP domain 247 287 IPR036241 -
Tako4g04308 292 MobiDBLite consensus disorder prediction 91 191 - -
Tako4g04308 292 Pfam UBA-like domain 40 79 - -
Tako4g04308 292 Gene3D SEP domain 252 290 IPR036241 -
Tako4g04308 292 MobiDBLite consensus disorder prediction 208 231 - -
Tako4g04308 292 SUPERFAMILY UBA-like 38 78 IPR009060 GO:0005515(InterPro)
Tako4g04308 292 MobiDBLite consensus disorder prediction 96 158 - -
Tako4g04308 292 MobiDBLite consensus disorder prediction 216 231 - -
Tako4g04308 292 SMART faf-3 248 292 IPR012989 -
Tako4g04308 292 ProSiteProfiles SEP domain profile. 252 292 IPR012989 -
Tako4g04308 292 CDD UBA-p47 41 78 - -
Tako4g04308 292 Gene3D - 37 79 - -
Tako4g04308 292 PANTHER UBX DOMAIN CONTAINING PROTEIN 38 287 - GO:0000045(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0007030(PANTHER)|GO:0031468(PANTHER)|GO:0043130(PANTHER)|GO:0043161(PANTHER)|GO:0061025(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tako4g04308 - -