AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tako4g04332 ATGATTAAGCAAATACTGAATAAGATTCCGAGGAAGCCATCTTCCAAATCATCACAGAACAACGAGACGGATTTAGTTGCGAGTAATGAAACTCGTAATTCTTCTGTTAAGTCGAATAATGGGAAGAAATCAGGTATAGTTGGAGCGGTCCAAGTGGTGCAGGTATCGGATGATGCTTCTTATGAAGCATTACCTAGTTTTCGAGTAGTATCAAGTTCAGAGAAACACAATTTGTTCATCAAAAAGTTGAATATGTGTTGTGTAGTGTTTGATTTCAGCGATCCATCTAAGAATTCGAAAGAGAAGGATGTGAAGAAACAGACTTTGCTCGAACTTGTTGAATATGTCTCCTCCGTTACCTCAAAATTCAACGAAGTTACGATACAGGAAATCACGAAAATGGTGTCTGCTAATCTCTTTCGATCTCTACCTGATACTACTCATGAAAACAAACTCATAGACATGTACGATCAGGAAGACGATGAATTCAGAATGGATCCATCATGGCCGCATCTCCAAATTGTGTATGAATTCCTTCTTAGGTGCGTGGCCTCCCCTGAAACAGATCCTAAGCTTACCAAACGATACATCGATCATTCATTCGTTTTAAAATTGCTTGATCTCTTCGACTCAGAAGATCAAAGAGAACGGGAGTATTTGAAGACAATCGTTCACCGGATTTACGGAAAGTTCATGGCACATCGTCCGTTCATTAGAAACGCAATCAACAACATCTTCTACCTCTTCATTTTTGAATCAGAAAAACACAACGGGATAGCTGAATTGCTCGAGATTTTGGGGAGTATAATCAACGGATTTGCTATGCCATTGAAGGAAGAACATAAGCTTTTTCTTGCGCATGTTTTAATTCCCCTCCACAAGCCCCGATGTTTATCGACGTATCATCAGCAACTCTCGTATTGCATTAGTCAGTTCATCGAGAAAGATTTCAAGCTCGCGGACATGGTGATTCGGGGAATACTCAAGTATTGGCCGGTGACTAATAGCTCAAAAGAAGTCATGTACCTTAGCGAATTGGAGGAGATTCTAGAAGCCACTAAGGCGGTGGAATTTGAACGGTGTATGGTTCCTTTATTCCGGCAGATCGGCCACTGCCTTAATAGTTCCCATTTCCAGGTGGCAGAGCGTGCGTTGTTCATGTGGAACAACGAGCATATAAGGAATTTAATAACTCAAAATCGGAAGGTGATTTTGCCGATTATCTTCCCGGCGTTAGAGAAAAACACACGATGTCACTGGAATCAAGCTGTTCAAAGTCTCACCGTAAATGTCAGGAAAATATTTTCCGACGCCGATCAGACACTGTTTGAAGAGTGCCAGGTCAGATACCGGGAAGATGAAACGAAGGAGAAAGAGAGCGTCGCAAAGCGACAGTCAAACTGGAACCGCTTGGATGCCATAGCCGCCTCTAAAGGTTTGACCAGTGACCATGCAATCGTCTCAAGGTTTGCCTCTTCTGTCACCATCACCGCCGGCACCGCCACAGCTATCGCTGCTACCACCGTGAAATCATGA 1536 42.77 MIKQILNKIPRKPSSKSSQNNETDLVASNETRNSSVKSNNGKKSGIVGAVQVVQVSDDASYEALPSFRVVSSSEKHNLFIKKLNMCCVVFDFSDPSKNSKEKDVKKQTLLELVEYVSSVTSKFNEVTIQEITKMVSANLFRSLPDTTHENKLIDMYDQEDDEFRMDPSWPHLQIVYEFLLRCVASPETDPKLTKRYIDHSFVLKLLDLFDSEDQREREYLKTIVHRIYGKFMAHRPFIRNAINNIFYLFIFESEKHNGIAELLEILGSIINGFAMPLKEEHKLFLAHVLIPLHKPRCLSTYHQQLSYCISQFIEKDFKLADMVIRGILKYWPVTNSSKEVMYLSELEEILEATKAVEFERCMVPLFRQIGHCLNSSHFQVAERALFMWNNEHIRNLITQNRKVILPIIFPALEKNTRCHWNQAVQSLTVNVRKIFSDADQTLFEECQVRYREDETKEKESVAKRQSNWNRLDAIAASKGLTSDHAIVSRFASSVTITAGTATAIAATTVKS 511
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tako4g04332 511 MobiDBLite consensus disorder prediction 1 42 - -
Tako4g04332 511 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 64 475 IPR002554 GO:0000159(InterPro)|GO:0007165(InterPro)|GO:0019888(InterPro)
Tako4g04332 511 PIRSF PP2A-B56 3 507 IPR002554 GO:0000159(InterPro)|GO:0007165(InterPro)|GO:0019888(InterPro)
Tako4g04332 511 Gene3D - 72 473 IPR011989 -
Tako4g04332 511 SUPERFAMILY ARM repeat 76 458 IPR016024 -
Tako4g04332 511 FunFam Serine-threonine protein phosphatase 2A regulatory subunit 71 474 - -
Tako4g04332 511 PANTHER SERINE-THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 477 IPR002554 GO:0000159(InterPro)|GO:0007165(InterPro)|GO:0019888(InterPro)
Tako4g04332 511 MobiDBLite consensus disorder prediction 10 42 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tako4g04332 K11584 serine/threonine-protein phosphatase 2A regulatory subunit B'
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Event-related genes

Select Gene_1 Gene_2 Event_name
163824 Tako2g00232 Tako4g04332