AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tako4g04376 ATGGTGAATTTTCCTGAATCGTTGTATGACGACCATAAAGGTGCTTCTAGCTCTAATTCCGCTCCACAGACCACCGCCAGACCACAATTCTTCACGGCGGCGGATCGTGCTGAAATTCAGCAGTGGATCAACTTGCTTAACCAACCTCAGACCAGAGCTGAGGCTATTACGCAGATCAGCAACCTCTACAGGACGCACAAGGAAAAAGGAGGTCGTGAGCTGGGGTTGCTTCTTTGGAATTCAAAAGGCACAGCTTTTTCATTGTTGGAGGAACTTTTGAGTGTATACAAGGTGTTATCACCTTCTAGACTTCGTATGGTACAAGCAACAAAGGTTTGCAATGCACTTGCCTTGATTCAGTGCATGGCAACTCATCCAGAAGCAAGACTCGAGCTTCTCAAAGCCCATATACCTGTATACATTTACCCTCTTCTCAACACCACTGAGAAACAACTTCCGCAGTATGATTACGTGCGACTCAACAGCTTAATGGTCATTGGGGCCCTTCTCAAGGTTGAAGACCTGAAAACTACTGAAATCGTTCGTTATCTTTTACAAAGTGAAACGGTTCCCTTATGCCTCCGTTGCATGGATGTGGGTAACGAGCTCACAAAATCGATGGCAGCATATGTGCTTGGGAAGATTTTAGGGCAAGAAGAAGGAAAGTTTTACTGTGGGTCATTTACGGAAAGATTTTTTTCGCTATCAAGAGCACTGTCAAAAATGGTCCATGAGTTTGCTGGAAAGCCGCGACCCGCGTTGTTGAAGAATACGCTGATTTGTTACCTGCGCCTCTCGGAAATCTCCAGGTCAGTCGGGTGCGTTGATGCATTGAAGAAACGCTACCCTAAGAGATTGATGGACCCCACGTACCTCCACCATGTTTGTGTAAGTATTTTCTCTTTAATGGTTAAAATATATATAGTTATATCAAACACTTTGAATATTGGACCATACAAGTCTAGCATCTTAATTGAACAATTAAGAAGGTCATCGAATAGTCTTTACCCGTTTGCATTCTAA 1023 43.7 MVNFPESLYDDHKGASSSNSAPQTTARPQFFTAADRAEIQQWINLLNQPQTRAEAITQISNLYRTHKEKGGRELGLLLWNSKGTAFSLLEELLSVYKVLSPSRLRMVQATKVCNALALIQCMATHPEARLELLKAHIPVYIYPLLNTTEKQLPQYDYVRLNSLMVIGALLKVEDLKTTEIVRYLLQSETVPLCLRCMDVGNELTKSMAAYVLGKILGQEEGKFYCGSFTERFFSLSRALSKMVHEFAGKPRPALLKNTLICYLRLSEISRSVGCVDALKKRYPKRLMDPTYLHHVCVSIFSLMVKIYIVISNTLNIGPYKSSILIEQLRRSSNSLYPFAF 340
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tako4g04376 340 Gene3D - 31 306 IPR011989 -
Tako4g04376 340 Pfam Cell differentiation family, Rcd1-like 42 291 IPR007216 GO:0006402(InterPro)|GO:0030014(InterPro)
Tako4g04376 340 PANTHER UNCHARACTERIZED 17 293 IPR007216 GO:0000932(PANTHER)|GO:0006402(InterPro)|GO:0017148(PANTHER)|GO:0030014(InterPro)|GO:0030015(PANTHER)
Tako4g04376 340 SUPERFAMILY ARM repeat 112 224 IPR016024 -
Tako4g04376 340 MobiDBLite consensus disorder prediction 1 24 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tako4g04376 K12606 CCR4-NOT transcription complex subunit 9
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Event-related genes

Select Gene_1 Gene_2 Event_name
163831 Tako2g00263 Tako4g04376
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Tako Rcd1 1.9e-68 No_clan TR Rcd1-like