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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tako4g04382 ATGGGTACCATATTCAAAGCAAGCTTGCTCTTATCATTCCTGTTGTGTCTTCTCTCACCTTCTGCATATTCAGCTTCTAATGGTGGATTGGTTAGAGTTAGTCTTAAAAAGAGGAAAATCAACCAATTAAACAAACATGGTGGACATTCTTCCTTAAATGAAGAAAATCCTGGAAGAAATTCTGGTCTTTATGGTAACTTTAGGGATTCAGAAAGTGACATAATTTCTCTGAAAAACTACATGGATGCTCAGTATTATGGTGAGATTGGTATTGGCACTCCACCTCAAAAGTTCACTGTCATTTTTGATACTGGAAGCTCTAACCTTTGGGTGCCTTCTACCAAGTGCTATTTCTCAGTTGCTTGCCTTTTCCACTCAAAATATAAGTCTAGCCAATCAAGTACATACAAAAAGAATGGGAAATCTGCTGCAATTCGATATGGAACTGGCGCTATCTCTGGTTTCTTTAGCCAAGATTCTATAAAACTTGGTGATTTTGTCATCAAGGAACAGGATTTCATAGAGGCAACCAAAGAGCCAGGTGTCACTTTTGTGGCGGCAAAGTTTGATGGTATACTTGGCCTTGGGTTTCAAGAAATCTCTGTGGTGATGCTCTTCCTGATTAGGTACAACATGGTTGACCAAGGTCTAGTTCATGAACCGGTTTTTTCATTTTGGCTTAATCGCAATACATCGAATGAGGAAGGGGGTGAACTTGTATTTGGTGGGGTTGATACAAATCATTTCAAAGGCAAACATACTTATGTCCCTGTTACTCAAAAGGGTTACTGGCAGTGGAATTTCTGA 807 39.28 MGTIFKASLLLSFLLCLLSPSAYSASNGGLVRVSLKKRKINQLNKHGGHSSLNEENPGRNSGLYGNFRDSESDIISLKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTKCYFSVACLFHSKYKSSQSSTYKKNGKSAAIRYGTGAISGFFSQDSIKLGDFVIKEQDFIEATKEPGVTFVAAKFDGILGLGFQEISVVMLFLIRYNMVDQGLVHEPVFSFWLNRNTSNEEGGELVFGGVDTNHFKGKHTYVPVTQKGYWQWNF 268
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tako4g04382 268 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 100 111 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Tako4g04382 268 SUPERFAMILY Acid proteases 10 267 IPR021109 -
Tako4g04382 268 ProSiteProfiles Peptidase family A1 domain profile. 85 268 IPR033121 -
Tako4g04382 268 Gene3D Acid Proteases 31 243 IPR021109 -
Tako4g04382 268 PRINTS Pepsin (A1) aspartic protease family signature 91 111 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Tako4g04382 268 PRINTS Pepsin (A1) aspartic protease family signature 237 250 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Tako4g04382 268 FunFam Aspartic proteinase A1 31 243 - -
Tako4g04382 268 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 12 267 IPR001461 GO:0004190(InterPro)|GO:0004190(PANTHER)|GO:0006508(PANTHER)|GO:0006508(InterPro)
Tako4g04382 268 Pfam Eukaryotic aspartyl protease 84 267 IPR033121 -
Tako4g04382 268 Gene3D Acid Proteases 244 267 IPR021109 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tako4g04382 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
163833 Tako2g00270 Tako4g04382