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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tako4g04488 ATGATCTGTGTTTTCTTGTTTCTTCATTGGTTTTTTTATGATCGCGACAATGATGAAGGGAGAAATCGAGAAAAGCTTCTACGGTTATTTTTACTCAAATACGCTTTACAGATTCCGACCTGCCATCTGCTTCCCATCTCTCGATTTCTCCACGAAACAGGAAAGAGGTTAATTGGACTAAAGAATATATTAGCAAGACAACTACAGAACATGCCTAAGGAATACATTGTTTGTCTTGTGATGGATAGGTATGATAGATCACAAATCTGTAATGGTTATTGGTGGAATTACATGCCGCCCTTATGTCAGGGGTTCACAAAAGATATTTTCTTGGAGAAAGAACGATGGCATGGGTATTTAAAAGATTATGATGGAGGGATACTTATGGAATGTAAGATTGACCCAAAGTTTCCATACACTGATTTATCAACCATGATTCATCATCAGAGGCGAAAACACCTTGCATGCTTCGATTATCACAATGATGGTCTGATTTACCATTGGGAAACTTTTCAAGGTAGTAAAATCAAAATGGTTTTCAAAGGGTTCAAATTCATTACTGAGAGAGCTCATCATCGAGATCATCTCATCAGGGAAATGGCCGCCATCTTAGCTCGCAAGTCGATCTCCGCTCTTCGCAATCGACAGTTTGTTATCACAGGACAATCATTGCATGCCCATAACATTGGAGCACGCTCATTTGCAACCAAACACTCATTTTCAACTGATAAAGATGATGAAGAAAGAGAGAAGCTTGCAATAGAAATGTCAAAAGACTGGAATTCTGTGTTTGAAAGGAGCATTAATACCTTATTTCTAACTGAACTGGTTCGAGGTCTCTCTCTGACACTCAAATACTTCTTTGAGCCAAAAGTTACTATAAATTATCCATTTGAGAAAGGTCCATTAAGCCCCCGTTTTCGTGGAGAACATGCACTCAGACGTTACCCAACTGGAGAGGAACGCTGTATCGCCTGTAAACTTTGTGAAGCTATATGCCCTGCTCAAGCTATTACCATAGAAGCAGAGGAGAGAGAAGATGGCAGTCGAAGAACCACAAGGTATGATATTGATATGACAAAATGTATTTACTGTGGATTCTGCCAAGAAGCATGCCCTGTTGATGCCATTGTTGAGGGGCCCAACTTTGAGTTTGCAACTGAAACTCATGAGGAACTTTTGTATGATAAGGAGAAGCTTCTAGAAAATGGGGACAGGTGGGAGACGGAAATTGCTGAGAATCTTAGATCCGAAAGCCTTTATCGATAA 1269 39.87 MICVFLFLHWFFYDRDNDEGRNREKLLRLFLLKYALQIPTCHLLPISRFLHETGKRLIGLKNILARQLQNMPKEYIVCLVMDRYDRSQICNGYWWNYMPPLCQGFTKDIFLEKERWHGYLKDYDGGILMECKIDPKFPYTDLSTMIHHQRRKHLACFDYHNDGLIYHWETFQGSKIKMVFKGFKFITERAHHRDHLIREMAAILARKSISALRNRQFVITGQSLHAHNIGARSFATKHSFSTDKDDEEREKLAIEMSKDWNSVFERSINTLFLTELVRGLSLTLKYFFEPKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 422
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tako4g04488 422 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 362 373 IPR017900 -
Tako4g04488 422 PANTHER NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 8, MITOCHONDRIAL 256 422 IPR010226 GO:0003954(PANTHER)|GO:0005747(PANTHER)|GO:0006120(PANTHER)|GO:0009060(PANTHER)|GO:0016020(InterPro)|GO:0016651(InterPro)|GO:0032981(PANTHER)|GO:0045272(PANTHER)|GO:0051539(InterPro)
Tako4g04488 422 SUPERFAMILY 4Fe-4S ferredoxins 296 406 - -
Tako4g04488 422 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 323 334 IPR017900 -
Tako4g04488 422 Gene3D - 296 421 - -
Tako4g04488 422 Hamap NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 270 406 IPR010226 GO:0016020(InterPro)|GO:0016651(InterPro)|GO:0051539(InterPro)
Tako4g04488 422 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 314 343 IPR017896 -
Tako4g04488 422 NCBIfam NADH-quinone oxidoreductase, chain I 279 400 IPR010226 GO:0016020(InterPro)|GO:0016651(InterPro)|GO:0051539(InterPro)
Tako4g04488 422 Pfam 4Fe-4S dicluster domain 322 376 IPR017896 -
Tako4g04488 422 Gene3D - 101 141 - -
Tako4g04488 422 FunFam NADH-quinone oxidoreductase subunit I 1 296 419 - -
Tako4g04488 422 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 353 382 IPR017896 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tako4g04488 K03941 NADH dehydrogenase (ubiquinone) Fe-S protein 8 [EC:7.1.1.2]
Tako4g04488 K00338 NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
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Event-related genes

Select Gene_1 Gene_2 Event_name
163845 Tako2g00373 Tako4g04488