AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tako4g04495 ATGAATCTTCTTCCTCCTTCCACACTCTGTTCCACGTCTGCTCATTCCTCAAACCGCCCTCCGCCACCGCCTCCTCCCCACCGCCACCTCCACTTCCGCACATCTCTCCGGCAAAACCTCCGCTACCTCAAATCCCTCGGAATCACCCAACCAACAGCCGCATCCCCCGAAACCCTATCTCACATCCTCTCAACCATAGACTACTTCAAATCCAAGGGATTTTCAGAACCCGATTTCCCACGAATCTCCTTTCTCTCCCCACATCTCTTCACTCCATCCTTCAACCCCACAACCATCGATCCAGTTTTTGAGTTTCTAACCGTTGATTTAGCAGCATCGCCGGAGGAATCCATTGGGTTGATTCTCAAATGCCCACACATCCTCGAATCAAATCCGGAATTTTGCTTGAAACCAACTCTCGAGTACCTGAAAAGATTGGGGATTAAGCAGCTGAACTCTCCAACGACCTTGAACGCTCATTTATTGGACACGAGAGTTGCTAAATTAGAAGAGAAGATGAGATTCTTACGAGGTGTTGGGTTTTCCGACGAGGAATGTAGACGGGTGTGTGGACGGTTTCCGGCGATATTTGGGTATGGTATAGAGCATAATTTGAGGCCGAAGTTTGAGTATTTGGTTAGGGAGATGAAGAGGAATGGGAGAGAGGAAGTGAATAAGTTTCCACAGTATTTTGGGTTCAGTTTGGAGAATCGGATAAAACCCAGACATTTGCATTTGAAACGAAGGAATGTTGTTGATGGTGAGGTACGATTGAATCGGATGTTATTGTGGAATGATGAAAGATTTTTCAAGAAATGGAAATAA 825 46.18 MNLLPPSTLCSTSAHSSNRPPPPPPPHRHLHFRTSLRQNLRYLKSLGITQPTAASPETLSHILSTIDYFKSKGFSEPDFPRISFLSPHLFTPSFNPTTIDPVFEFLTVDLAASPEESIGLILKCPHILESNPEFCLKPTLEYLKRLGIKQLNSPTTLNAHLLDTRVAKLEEKMRFLRGVGFSDEECRRVCGRFPAIFGYGIEHNLRPKFEYLVREMKRNGREEVNKFPQYFGFSLENRIKPRHLHLKRRNVVDGEVRLNRMLLWNDERFFKKWK 274
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tako4g04495 274 Gene3D Transcription termination factor 3, mitochondrial 54 274 IPR038538 -
Tako4g04495 274 SMART mt-12 187 219 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Tako4g04495 274 SMART mt-12 221 252 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Tako4g04495 274 SMART mt-12 80 113 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Tako4g04495 274 SMART mt-12 118 149 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Tako4g04495 274 SMART mt-12 154 182 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Tako4g04495 274 PANTHER CGI-12 PROTEIN-RELATED 43 272 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Tako4g04495 274 MobiDBLite consensus disorder prediction 1 28 - -
Tako4g04495 274 MobiDBLite consensus disorder prediction 1 16 - -
Tako4g04495 274 Pfam mTERF 35 269 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tako4g04495 K15031 mitochondrial transcription termination factor family protein
leaf

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Tako mTERF 9e-34 No_clan TR mTERF