AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tako4g04520 ATGTTCTTCAGCTTCACACCTTTTAAAGGCATGAAATCAAAAATCGTTCCTTACTACATGAACGGAAATCCATCCAGTCTCTTCTGCATCTTGCCAAGAGACGATTCTTCCCGCTTTTTCCCTCCGGGCACCGCCCCTGTTTACCTTAACGTCTACGACATCTCCACCATCAACAGTTGCATATCATGGACAGGCATCGGCGCCTTTCACACAGGTTTAGAAGTTCACGGCGTGGAATATGGTTTCGGATGTCATCAAGAATCAGAGAGCGGTGTTTTTGAGATCGAACCTCGAAAATGCCCTGGGTTTAAATTCAGGGAATCGATTTTAATGGGGACAACGAAATTGAGCCCTAGCCAAGTTCAAAGATTCATTGAGCTGCAATCCAATAACTACTATGGCGACACGTACCACTTATTTGGGAAGAATTGCAATCATTTTTGCGACGACATGTGTCACAAATTAACCGGAAATAAAATCCCTAGATGGGTTAATCGACTTGCTAGAATAGGTTCATGTTGCCGATGTATACTTCCGAAATCAATCAAGGGTTCGGCAGTTAAAAACAAATCAAATTCCGATGAAGATGAACACAAGAGTTTACGAGGCTCTTTTAGTTGTTTTTCGTTGTTTTCAACACATAATAAATTGAGAAAAGTTTCAATATCGTCGTTATATAAGCATTCGCTCTATAAAGGATGCCTTCCGCCATGGGAGTTGCAGGTGGACTCGCGAAGGCTTTGTGAAGAAGATGAAGATGATGAGTGA 768 42.06 MFFSFTPFKGMKSKIVPYYMNGNPSSLFCILPRDDSSRFFPPGTAPVYLNVYDISTINSCISWTGIGAFHTGLEVHGVEYGFGCHQESESGVFEIEPRKCPGFKFRESILMGTTKLSPSQVQRFIELQSNNYYGDTYHLFGKNCNHFCDDMCHKLTGNKIPRWVNRLARIGSCCRCILPKSIKGSAVKNKSNSDEDEHKSLRGSFSCFSLFSTHNKLRKVSISSLYKHSLYKGCLPPWELQVDSRRLCEEDEDDE 255
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tako4g04520 255 PANTHER DESUMOYLATING ISOPEPTIDASE 44 197 IPR008580 GO:0008233(InterPro)|GO:0016579(PANTHER)|GO:0070646(PANTHER)|GO:0101005(PANTHER)
Tako4g04520 255 SMART DUF862-2a 45 183 IPR008580 GO:0008233(InterPro)
Tako4g04520 255 Pfam PPPDE putative peptidase domain 46 180 IPR008580 GO:0008233(InterPro)
Tako4g04520 255 ProSiteProfiles PPPDE domain profile. 45 182 IPR008580 GO:0008233(InterPro)
Tako4g04520 255 Gene3D PPPDE domains 41 199 IPR042266 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tako4g04520 K22763 deubiquitinase DESI2 [EC:3.4.19.12]