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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tako5g02564 ATGTCATCAATTGAACAAAAAGAAGAATCAAAAGGGAATGAAAGCAATGTGAGCCTGATCAAAGGCTACCGCAAAAAAGTCGAAGATGAACTTGCTAAAATCTGCAGTGACATTCTTGAAATCATAGATAAGCATCTCATCCCCTCATCTGGATCAGGAGAAGCCACTGTTTTCTACTACAAGATGAAAGGTGACTACTTCAGATACCTTGCAGAGTTCAAGACAGATCAGGAAAGGAAGGATGCTTCTGAAATGTCATTGAAGGGTTATGAGGCTGCTTCTGCCGCTGCAAATACAGATCTTCCTTCAACCCACCCAATTCGATTAGGCCTAGCCCTTAATTTCTCAGTGTTTTACTATGAAATTATGAATTCTCCTGAGAGGGCATGCCATTTGGCAAAACAAGCTTTTGATGAGGCGATTGCTGAGCTGGACTCATTAAGTGAAGAATCTTACAAAGACAGCACCTTGATCATGCAACTCTTGAGAGATAACTTAACTCTTTGGACCTCTGATTTACCTGAAGATGGAGGTGACGAAAACCATCCAAAAGGGGAAGAATCTAAATCAGCGGAACCAGAGGAGAAGAAGCAGTGA 597 41.54 MSSIEQKEESKGNESNVSLIKGYRKKVEDELAKICSDILEIIDKHLIPSSGSGEATVFYYKMKGDYFRYLAEFKTDQERKDASEMSLKGYEAASAAANTDLPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDSLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGGDENHPKGEESKSAEPEEKKQ 198
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tako5g02564 198 Pfam 14-3-3 protein 1 170 IPR023410 -
Tako5g02564 198 MobiDBLite consensus disorder prediction 175 198 - -
Tako5g02564 198 Gene3D - 1 182 IPR036815 -
Tako5g02564 198 MobiDBLite consensus disorder prediction 170 198 - -
Tako5g02564 198 PRINTS 14-3-3 protein zeta signature 89 115 IPR000308 -
Tako5g02564 198 PRINTS 14-3-3 protein zeta signature 143 172 IPR000308 -
Tako5g02564 198 PRINTS 14-3-3 protein zeta signature 116 142 IPR000308 -
Tako5g02564 198 PRINTS 14-3-3 protein zeta signature 54 76 IPR000308 -
Tako5g02564 198 PRINTS 14-3-3 protein zeta signature 23 47 IPR000308 -
Tako5g02564 198 SUPERFAMILY 14-3-3 protein 1 177 IPR036815 -
Tako5g02564 198 ProSitePatterns 14-3-3 proteins signature 2. 152 171 IPR023409 -
Tako5g02564 198 PANTHER 14-3-3 PROTEIN 1 175 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
Tako5g02564 198 SMART 1433-4 1 183 IPR023410 -
Tako5g02564 198 Coils Coil 130 150 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tako5g02564 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
165216 Tako5g02564 Tako6g01646
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tako2g07299 . 139 251 14-3-3 family AT1G26480 88.496 2.90e-71 212.0
Tako3g01135 . 121 238 14-3-3 family AT3G02520 93.22 1.84e-79 235.0
Tako3g01266 . 3 254 14-3-3 family AT3G02520 89.286 6.85e-167 460.0
Tako3g01570 . 2 256 14-3-3 family AT1G78300 86.719 4.83e-163 450.0
Tako3g02247 . 24 125 14-3-3 family AT1G34760 79.412 6.78e-56 172.0
Tako4g03862 . 1 263 14-3-3 family AT2G42590 76.426 1.41e-148 414.0
Tako4g05528 ACH 1 247 14-3-3 family AT5G65430 83.806 2.90e-155 430.0
Tako5g02564 ACH 69 256 14-3-3 family AT1G26480 86.772 8.74e-121 341.0
Tako6g01153 . 6 257 14-3-3 family AT2G42590 79.447 3.86e-147 410.0
Tako6g01646 ACH 6 264 14-3-3 family AT1G26480 80.695 2.52e-156 434.0
Tako7g03693 ACH 104 263 14-3-3 family AT2G42590 56.25 6.97e-51 160.0
Tako7g03861 ACH 13 173 14-3-3 family AT5G10450 67.081 3.30e-71 213.0
Tako7g03872 . 2 240 14-3-3 family AT1G34760 75.732 5.20e-137 384.0
Tako7g03871 . 2 245 14-3-3 family AT1G34760 75.102 3.85e-138 387.0
Tako7g03926 ACH 7 266 14-3-3 family AT1G35160 85.115 3.10e-165 456.0
Tako7g03956 ACH 1 247 14-3-3 family AT5G10450 85.425 4.06e-159 439.0
Tako8g01525 ACH 3 259 14-3-3 family AT1G78300 88.716 8.05e-168 462.0