AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tako5g02587 | ATGGAAGAATCACAGGAGCCAGTTCTTCAATCCAACAACATAGAATCTAGCAATGGGAATGGGAATGGGAATGGATATAGCTCAAGATTCAACTTAAATAACCGTGGGAGGCAGAACTTCATAGGACCTGGTTTTCCAGGGTTAAAAAAGAGAGGTCATGCACATGGAAACCGATCATGGATAAAAATAGAGGAAAATGGGAACTCAAAAGTGGTGGAATTAGATAAAGCAAGTGTAATGAGACAGTGTTGTTTGCCAGCAAGAGATCTTCGGCTTTTGGATCCTCTTTTTATATATCCTTCAACAATATTAGGGCGTGAGAAGGCGATTGTTGTGAGTCTTGAACAGATTAGATGTATAATTACAGCTGATGAAGTGTTTCTTATGAATTCACTTGATGCCTCTGTGGTTCAATATAAGTCTGAATTGTGTAAACGCCTTCAGGAAGAGAAATGTCATTCAGATGACCTACCATTTGAGTTTAGGGCACTGGAACTAGCTTTGGAATTTACCTGCCTCGGTCTTGACACTCAGGTGAAAGAATTGGAAATGGAAATTCACCCTGTACTTGATGAACTAGCAAAATCCATAAGCACCCTGAATCTTGAACGTGTTCGTAGATTCAAAGGCCACCTTCTAGCATTGACTCAACGTGTCCAAAAGGTTTGTGACGAAATAGAACACCTCATGAACGATGATGGGGACATGGCGGAAATGTACCTAACCGAAAAGAAACAAAAGGATTCATGTACCGATTTATACGATCAAGTTCAAGGTGGTGGGACCGGGACCAGTAGTATCGCGACTTCAATAACGGGGCCCGTATTGGGAGTCATTTCAAAATCCGCCCCGGTTTCTCCCGTGGGGTCCGCAAGCGGGTCACAAAGATTGCAAAGGGCGTTTAGTAACATAAGTGCACATAAACACGGAAGCTTGTTGAGTTCGTCTGTCACTGGTGAAACCGAAAACATTGATCAACTCGAGATGTTGCTCGAAGCTTACTTTGTTGGAATCGACAACACTTTGAATAAATTGCTTTCCCTCAAGGAGTATATCGATGACACCGAAGATCTTATCAACATTAAGCTTGGAAATGTTCAAAACAAGTTGATTAAATTCGAGCTGCTATTAACAGCGGCGACATTTTTAGCGACGGTATTTGCGGTTGTGACAGCTGTGTTTGGAATGAATTTTGAAGACGATGTGTTCAATGAGCCAAATAGATTCAATTGGGTGGTTTCCATAAGTGCGTGTTTGTGTGGTGTCTTGTATATTTGTTTCTTGCTTTATTTCAAACATAAGAAAGTTTTCCCGCTGTAG | 1320 | 41.36 | MEESQEPVLQSNNIESSNGNGNGNGYSSRFNLNNRGRQNFIGPGFPGLKKRGHAHGNRSWIKIEENGNSKVVELDKASVMRQCCLPARDLRLLDPLFIYPSTILGREKAIVVSLEQIRCIITADEVFLMNSLDASVVQYKSELCKRLQEEKCHSDDLPFEFRALELALEFTCLGLDTQVKELEMEIHPVLDELAKSISTLNLERVRRFKGHLLALTQRVQKVCDEIEHLMNDDGDMAEMYLTEKKQKDSCTDLYDQVQGGGTGTSSIATSITGPVLGVISKSAPVSPVGSASGSQRLQRAFSNISAHKHGSLLSSSVTGETENIDQLEMLLEAYFVGIDNTLNKLLSLKEYIDDTEDLINIKLGNVQNKLIKFELLLTAATFLATVFAVVTAVFGMNFEDDVFNEPNRFNWVVSISACLCGVLYICFLLYFKHKKVFPL | 439 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tako5g02587 | 439 | Gene3D | Magnesium transport protein CorA, transmembrane region | 132 | 370 | - | - | |
| Tako5g02587 | 439 | SUPERFAMILY | Magnesium transport protein CorA, transmembrane region | 376 | 428 | IPR045863 | - | |
| Tako5g02587 | 439 | FunFam | Magnesium transporter MRS2-1 | 47 | 131 | - | - | |
| Tako5g02587 | 439 | Pfam | Magnesium transporter MRS2-like | 65 | 248 | - | - | |
| Tako5g02587 | 439 | CDD | Mrs2-Mfm1p-like | 60 | 436 | IPR039204 | - | |
| Tako5g02587 | 439 | Gene3D | - | 49 | 131 | - | - | |
| Tako5g02587 | 439 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
| Tako5g02587 | 439 | Gene3D | Magnesium transport protein CorA, transmembrane region | 377 | 435 | - | - | |
| Tako5g02587 | 439 | PANTHER | RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL | 45 | 436 | IPR039204 | GO:0015095(PANTHER)|GO:0015693(PANTHER) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tako5g02587 | K16075 | magnesium transporter |
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| 5314885 | Tako | Tako5g02587 | Tako-Chr5:89039848 | Tako7g04798 | Tako-Chr7:110903493 | |
| 5342258 | Tako | Tako5g02587 | Tako-Chr5:89039848 | Tako8g02619 | Tako-Chr8:36943747 |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Tako1g01636 | . | 123 | 459 | MRS2 gene family | AT5G22830 | 76.331 | 1.09e-174 | 498.0 | |
| Tako1g01637 | . | 123 | 339 | MRS2 gene family | AT5G22830 | 72.018 | 8.23e-106 | 319.0 | |
| Tako1g01638 | . | 123 | 459 | MRS2 gene family | AT5G22830 | 76.331 | 1.09e-174 | 498.0 | |
| Tako1g02911 | . | 1 | 386 | MRS2 gene family | AT5G09690 | 71.907 | 0.0 | 551.0 | |
| Tako1g03560 | . | 249 | 354 | MRS2 gene family | AT1G80900 | 42.623 | 6.35e-19 | 79.0 | |
| Tako1g03652 | . | 249 | 354 | MRS2 gene family | AT1G80900 | 47.934 | 6.33e-23 | 90.1 | |
| Tako2g00557 | . | 47 | 484 | MRS2 gene family | AT3G19640 | 61.81 | 3.04e-180 | 513.0 | |
| Tako2g00569 | . | 47 | 484 | MRS2 gene family | AT3G19640 | 62.031 | 0.0 | 515.0 | |
| Tako2g04002 | ACH | 1 | 483 | MRS2 gene family | AT3G19640 | 57.873 | 3.75e-170 | 485.0 | |
| Tako3g05854 | . | 249 | 354 | MRS2 gene family | AT1G80900 | 46.281 | 5.51e-21 | 84.7 | |
| Tako4g00040 | . | 116 | 152 | MRS2 gene family | AT1G16010 | 70.27 | 1.50e-10 | 59.3 | |
| Tako4g03658 | . | 127 | 197 | MRS2 gene family | AT1G80900 | 61.111 | 8.01e-24 | 93.2 | |
| Tako4g03672 | . | 127 | 197 | MRS2 gene family | AT1G80900 | 61.111 | 1.60e-23 | 92.4 | |
| Tako4g05035 | . | 1 | 436 | MRS2 gene family | AT3G58970 | 65.171 | 0.0 | 565.0 | |
| Tako5g02587 | . | 26 | 421 | MRS2 gene family | AT2G03620 | 66.908 | 7.20e-178 | 502.0 | |
| Tako5g02639 | . | 249 | 354 | MRS2 gene family | AT1G80900 | 47.934 | 6.33e-23 | 90.1 | |
| Tako6g02807 | . | 133 | 235 | MRS2 gene family | AT1G80900 | 70.192 | 1.23e-41 | 147.0 | |
| Tako6g03315 | . | 133 | 235 | MRS2 gene family | AT1G80900 | 68.269 | 1.24e-40 | 139.0 | |
| Tako6g03345 | . | 133 | 235 | MRS2 gene family | AT1G80900 | 68.269 | 1.24e-40 | 139.0 | |
| Tako7g04798 | ACH | 1 | 443 | MRS2 gene family | AT1G80900 | 77.455 | 0.0 | 661.0 | |
| Tako8g02619 | ACH | 1 | 442 | MRS2 gene family | AT1G16010 | 82.998 | 0.0 | 726.0 |