AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tako5g02592 ATGGAATCGCACAAAGACAGGGGCGAAGTAAGAATCCATGAAAATTTAGATGAACTCAGTACCGATTTGGCTGATTACGTGGCAGAATTATCGGAGGCATCTGTGAAAGAGCGTGGCGTTTTCGCCATTGCTCTATCTGGTGGTTCTCTCATTAGCTTAATGAGGAATCTATGTGGAGCTCCTTATAACAAGACTGTAGATTGGTCCAAATGGTATATATTTTGGGCCGATGAACGTGTGGTTGCCAAAAATCACGTCGATAGTAACTATAAACTTGCAAAAGATCATCTTTTGTCTAAGTTACCTATTGTTCCGAGCCATGTACATTCGATCAACGATTCCCTCACGGCAGAAGAAGCTGCAAATGAATACGAGTTTGTGATTAGGCAACTTGTGAGGACACGTGTCATCAATGTGTCTGACATCAGCGACTTCCCGAAGTTTGACCTAATCCTACTTGGCATGGGCCCGGACGGACACGTGGCGTCTCTGTTCCCTAACCATTCGGTTCTTGAAGAGAAAAACGAGTGGGTGACATTCATCACTACTTCGCCTAAACCTCCGCCCGAAAGAATCACCTTCACCCTGCCTGTTATCAACTCGGCCGCCAATGTGGCGGTGGTGGTGACAGGTGGCGGAAAGGCGGAAGCTGCCAGGCTGGCGATAGATGGTGTGGGGCCCGAGTGTGAAGGGTTGCCAGCTAGGATGATTGAACCGGTTGTTGGGAAATTGGTTTGGTTTTTGGATAACCAGGCTGGGTCAAAGCTTAAGAGCTTTTCTCAATTTTCTTAG 792 47.1 MESHKDRGEVRIHENLDELSTDLADYVAELSEASVKERGVFAIALSGGSLISLMRNLCGAPYNKTVDWSKWYIFWADERVVAKNHVDSNYKLAKDHLLSKLPIVPSHVHSINDSLTAEEAANEYEFVIRQLVRTRVINVSDISDFPKFDLILLGMGPDGHVASLFPNHSVLEEKNEWVTFITTSPKPPPERITFTLPVINSAANVAVVVTGGGKAEAARLAIDGVGPECEGLPARMIEPVVGKLVWFLDNQAGSKLKSFSQFS 263
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tako5g02592 263 PANTHER 6-PHOSPHOGLUCONOLACTONASE 3 258 IPR039104 -
Tako5g02592 263 FunFam Probable 6-phosphogluconolactonase 5 257 - -
Tako5g02592 263 Pfam Glucosamine-6-phosphate isomerases-6-phosphogluconolactonase 16 246 IPR006148 GO:0005975(InterPro)
Tako5g02592 263 NCBIfam 6-phosphogluconolactonase 12 256 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Tako5g02592 263 Coils Coil 16 36 - -
Tako5g02592 263 Gene3D - 5 257 - -
Tako5g02592 263 CDD 6PGL 17 248 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Tako5g02592 263 SUPERFAMILY NagB-RpiA-CoA transferase-like 10 257 IPR037171 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tako5g02592 K01057 6-phosphogluconolactonase [EC:3.1.1.31]
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
164876 Tako3g06071 Tako5g02592
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
5308411 Tako Tako3g06076 Tako-Chr3:148930266 Tako5g02592 Tako-Chr5:89229284
5308412 Tako Tako3g06077 Tako-Chr3:148949620 Tako5g02592 Tako-Chr5:89229284
5342371 Tako Tako5g03090 Tako-Chr5:101213933 Tako5g02592 Tako-Chr5:89229284
5343970 Tako Tako7g01714 Tako-Chr7:30305495 Tako5g02592 Tako-Chr5:89229284
5349018 Tako Tako3g06071 Tako-Chr3:148892327 Tako5g02592 Tako-Chr5:89229284