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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tako5g02593 ATGCCAACTTTAACGAAGCTATTCACGATGCAAGAAGCTTCAGAGCACAATTCCGCTGGCGATTGCTGGGTTGTTATTGACGGCAAGGTGTATGATGTGTCAACGTATCTGGATGAACACCCAGGTGGAGATGATGTCCTACTCCAGGTTACTGGAAAAGACGCGACAGATGAATTTGAAGATGCGGGGCATAGCAAAACTGCAAGGGAGCTAATGGAAAGTTTTTGTATTGGTGAGGTGGACACGTCAGACATCCCTCAGCTTGAAATAGTATCTGAGAAGCAACAAAATTACATTTTTGACCTTAGTAAGCAATATTGGGCTGTTCCATTAGCAGCTGCTGGCATTTCAGTGGTTGTTACTTTCTTGTACTTGCGCAAGAAATAA 387 43.67 MPTLTKLFTMQEASEHNSAGDCWVVIDGKVYDVSTYLDEHPGGDDVLLQVTGKDATDEFEDAGHSKTARELMESFCIGEVDTSDIPQLEIVSEKQQNYIFDLSKQYWAVPLAAAGISVVVTFLYLRKK 128
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tako5g02593 128 PANTHER CYTOCHROME B5 4 122 IPR050668 GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Tako5g02593 128 SUPERFAMILY Cytochrome b5-like heme-steroid binding domain 4 89 IPR036400 -
Tako5g02593 128 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
Tako5g02593 128 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Tako5g02593 128 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Tako5g02593 128 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Tako5g02593 128 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Tako5g02593 128 Pfam Cytochrome b5-like Heme-Steroid binding domain 9 80 IPR001199 -
Tako5g02593 128 SMART Cyt-b5-2 8 81 IPR001199 -
Tako5g02593 128 Gene3D - 3 86 IPR036400 -
Tako5g02593 128 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Tako5g02593 128 FunFam Cytochrome b5 type B 3 85 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tako5g02593 K23490 cytochrome b5
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
5314889 Tako Tako5g02593 Tako-Chr5:89275262 Tako8g01214 Tako-Chr8:19946314
5342259 Tako Tako5g02593 Tako-Chr5:89275262 Tako5g03091 Tako-Chr5:101215684
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tako1g01709 . 42 125 NADPH P450 reductases gene family AT5G17770 30.337 3.69e-08 47.4
Tako1g03622 ACH 39 281 NADPH P450 reductases gene family AT5G17770 40.613 6.50e-64 202.0
Tako1g06504 . 30 281 NADPH P450 reductases gene family AT5G17770 81.349 3.00e-158 439.0
Tako1g06505 . 30 281 NADPH P450 reductases gene family AT5G17770 76.19 7.26e-144 402.0
Tako2g02640 . 40 141 NADPH P450 reductases gene family AT5G17770 33.645 2.63e-13 65.5
Tako4g02248 . 1 134 NADPH P450 reductases gene family AT5G53560 65.672 7.25e-65 192.0
Tako4g02250 ACH 1 131 NADPH P450 reductases gene family AT5G53560 50.382 4.44e-46 144.0
Tako5g00303 . 2 120 NADPH P450 reductases gene family AT1G60660 63.866 3.66e-50 153.0
Tako5g00574 ACH 38 273 NADPH P450 reductases gene family AT5G17770 38.76 5.35e-48 170.0
Tako5g00575 . 38 273 NADPH P450 reductases gene family AT5G17770 38.76 1.15e-50 171.0
Tako5g02593 . 1 134 NADPH P450 reductases gene family AT1G26340 63.433 2.55e-58 175.0
Tako5g03091 ACH 1 133 NADPH P450 reductases gene family AT5G53560 72.18 1.44e-70 206.0
Tako5g03196 . 42 125 NADPH P450 reductases gene family AT5G17770 30.337 1.70e-08 48.5
Tako6g00712 . 38 140 NADPH P450 reductases gene family AT5G17770 35.398 1.55e-13 66.6
Tako8g00130 ACH 39 281 NADPH P450 reductases gene family AT5G17770 42.146 2.54e-64 203.0
Tako8g01006 . 31 281 NADPH P450 reductases gene family AT5G17770 84.064 4.93e-162 449.0
Tako8g01214 . 5 133 NADPH P450 reductases gene family AT2G32720 75.194 7.07e-75 217.0
Tako8g01387 . 42 125 NADPH P450 reductases gene family AT5G17770 30.337 1.70e-08 48.5
Tako8g05019 . 6 78 NADPH P450 reductases gene family AT2G32720 39.726 2.59e-13 62.8
Tako8g05413 . 42 125 NADPH P450 reductases gene family AT5G17770 29.213 4.49e-08 47.4