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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tako6g02919 ATGGCCAAGATTAAGATTGGAATCAATGGATTCGGAAGAATCGGCCGTTTGGTGGCCAGAGTTGCTCTACAGAGCGATGATGTTGAACTCGTCGCCGTTAATGATCCTTTCATTACTACCGATTATATGATCTACATGTTCAAATACGACAGTGTTCATGGCCCATGGAAAAAGCATGAGGTCAAAGTCAAGGATCCCAAAATTCTCCTCATCGGCGACAAACCTATCACCGTTTTCGGCATGAGAAACCCAGAAGAGATCCCATGGGGTGAGGCCGGAGCCGAATACGTCGTAGAATCCACCGGAGTTTTCACTGATAAGGACAAAGCTGCAGCCCATTTGAAGGGAGGTGCAAAGAAGGTTGTGATTTCTGCTCCAAGTGCAAATGCTCCCATGTTTGTAATGGGCGTCAATGAAAAGGAATACACCTCCGACATCACCATTGTCTCTAACGCCAGCTGTACAACCAACTGTCTCGCTCCAATCGCAAAAGTCATTAACGACAAATTCGGAATCGTTGAAGGCCTTATGACCACCGTTCACTCCATCACAGCAACCCAGAAGACAGTTGATGGTCCATCAATGAAGGACTGGAGAGGTGGAAGAGCTGCTTCTTTCAATATCATTCCCAGTAGTACCGGAGCTGCCAAGGCTGTTGGAAAGGTTCTTCCTGCCCTTAATGGAAAGCTAACAGGGATGGCTTTCCGTGTACCTACTGTTGACGTGTCAGTCGTTGACCTTACTGCCAGGCTGGAAAAACCCGCTTCCTATGACGAAATCAAGGCTGCTATCAAGGCGGAAGCAGAGGGAAGTTTGAAGGGAATTTTGGGTTACACCGAGGATGATGTTGTATCCACAGACTTTGTGGGTGACTCTAGGTCGAGTATATTTGATGCGAAAGCTGGAATTGCATTAAACAACAATTTTGTGAAGGTTGTGTCTTGGTATGATAACGAATGGGGATATAGTAATCGTGTTGTGGACTTGATCCGTCATATGTCCAAGTCTTAG 1011 46.29 MAKIKIGINGFGRIGRLVARVALQSDDVELVAVNDPFITTDYMIYMFKYDSVHGPWKKHEVKVKDPKILLIGDKPITVFGMRNPEEIPWGEAGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSANAPMFVMGVNEKEYTSDITIVSNASCTTNCLAPIAKVINDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTARLEKPASYDEIKAAIKAEAEGSLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALNNNFVKVVSWYDNEWGYSNRVVDLIRHMSKS 336
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tako6g02919 336 FunFam Glyceraldehyde-3-phosphate dehydrogenase 4 163 - -
Tako6g02919 336 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 113 126 IPR020831 GO:0016620(InterPro)
Tako6g02919 336 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 232 249 IPR020831 GO:0016620(InterPro)
Tako6g02919 336 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 175 191 IPR020831 GO:0016620(InterPro)
Tako6g02919 336 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 148 166 IPR020831 GO:0016620(InterPro)
Tako6g02919 336 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 272 287 IPR020831 GO:0016620(InterPro)
Tako6g02919 336 FunFam Glyceraldehyde-3-phosphate dehydrogenase 153 318 - -
Tako6g02919 336 Gene3D Dihydrodipicolinate Reductase; domain 2 153 318 - -
Tako6g02919 336 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 170 IPR036291 -
Tako6g02919 336 NCBIfam glyceraldehyde-3-phosphate dehydrogenase, type I 5 328 IPR006424 GO:0006006(InterPro)|GO:0016620(InterPro)|GO:0050661(InterPro)|GO:0051287(InterPro)
Tako6g02919 336 Gene3D - 4 332 - -
Tako6g02919 336 SMART gp-dh-n-7 4 154 IPR020828 GO:0051287(InterPro)
Tako6g02919 336 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 159 316 IPR020829 GO:0016620(InterPro)
Tako6g02919 336 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 152 159 IPR020830 GO:0016620(InterPro)
Tako6g02919 336 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 153 316 - -
Tako6g02919 336 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 4 107 IPR020828 GO:0051287(InterPro)
Tako6g02919 336 PIRSF GAPDH 2 336 IPR020831 GO:0016620(InterPro)
Tako6g02919 336 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 2 335 IPR020831 GO:0004365(PANTHER)|GO:0005829(PANTHER)|GO:0006096(PANTHER)|GO:0016620(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tako6g02919 K00134 glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
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Event-related genes

Select Gene_1 Gene_2 Event_name
164425 Tako3g00108 Tako6g02919