AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tako6g03046 ATGCTAAGCATCAATGGTGAGCATCATGGGTATTTTGATGGAATGAGGGGGCTAAGACAAGGGTGCCCTCTCTCTCCATATTTATTTACTCTTGTTATCGAAGTTTTTAATCTCATGTTTAAAAGAAGGATTGAAGAAGAAGGTGGATTCAAATACCACTGGCGAAGCAAAGAGCAAAAGCTAAGTCACTTGAGTTTTGTGGATGATCTCATGATCTTCTGTTATGGGAACAAGGCATCTTTTCGGATCATCAAGGACTCTTTGGAAGTATTTGCTAAAGTTGCTGGATTAAAGCCTAACTTGCTCAAAAGTAATGTCAAAGAAACTGTTCAGAAGGATCTGCTGGGAATTCTTCCTTTTGCTGTTGGAAAACTTCCTATGAGGTATTTGGGAGTGCCTTTAATTTCAACAAAATTGTTTGTAAAAGATTGTAAAAGTTTGGTTGATAAAGTGAAGAAAAGAGTCAAGAGTTGGGAGAATAAATCTCTTTCATATGCTGGCAGACTGCAACTGATATCTTCTGTCTTGGAGAGATACAATATCAAGGACAAAGTGAAAGATTTTCTTAGTGATAGAAGTTGGTGCTGGACAGAGAGTTGGGTTTCTCTTATTCCCGAACTATTGGATCACCCTGTTCTAGCCTTATCTGTTTCTAAGCATGATGTTCTAAAATGGTGCAAAAATAATGGTGATGTGGTTGATTTTAGTACTCAGCAGGTGTGGAAGGACACTCAAAGTCTGGTTCCTAAGTTGAATGGTGTTGTCTGGTTTGCGGGTCATTTTTTTGGGGACCATTCCTGCGAAATTTTCTGGGACTGTGGGTTGTACCGTTTTCTGCATGCTGTGGGCAGAAATGTGGTTCAAAGAGGAACATGGCAGCAGGGGGTGCCGGAACTGCAAAAATATTTGGCTGGTGTCAGAGAGGCTTATGGTGATCAGATGGCTGCAGCAAAATCTATGAGGGTGCTATATCATCTGACTGTCAAGGAGTTAAGGAATAAGTCAAGGGATAGTCAACAGGTGCAGAGGGTATATGAGAGTGATTTGTATCACTCTCAATTGTTTAGAGTGTGTTCTCAGCTGGGCATTATTTTTGCAGTCCTGTGTTCTGCTATCCGCACATTTTTGGCACAGCGAAGTGCAAAGGAGCTGGTAACGACAGCAGGCTCCCAAGGCCCCAAGGTCACTCCATTTGGTACTGACCCTGATGAAACCGGGCTCTACAGAGCGTCGGGGTGTGTGTCTTTCATTCGTAAGCCTATCAGTCACTTAGGTGATCTTTTGTGGTGTGATGATGTGATGCATATTAAGAGGATGAGGCTTGTGCACCGAGGCTATATTCTGATGATTCTGAGGACTTATGATGATGATGATGATTCTATTGTGCATGTTCTTATTATTGGTCATCTGCGATACACAGGTGCACAGTCCAGTCCAACTGATAGGCTTAATGGGCGAGATCCAGATGATATACCTCGTATTCCTGGGTTCATTCCAGGCCCTGGACTTGGATTTTGGCCTAGATTGGCTGGGTTTCAGACCTTACAGTTTAGGAGGGCACTGCCATTTTTCCAAAAAAAAAAAAAAAAACAACCGAGTGTTCCTCACAAGAACGAAAGGGCTATGGTGGCTCAGCAGTTCACATGGGACGATCAACTGTTGGCGCTGAACCTGACAAATGAAAGAGCAGCGAACCTGGCTCAGATTGAGGAAACTGAAGAGGCAGACCAAGCTAAAGACAACATGAAGGATTTGCAGTTCACCTTCATGGTCTCTACCACCCCTGAAACGAAAGAGTGGATCATGGATTCAGAAGACATGACATCATGGAAAGTCATGCTCAAAACCCCCGCATCCATCGTCCTAATCATGTACACCTTCATATCAGTCTGGCTTGTTGGCGACCTTACCGCCTTCCATCTCTATCTCATCACTACAAATCAGACGACATATGAGAACTTCAGATACCGGTACGATAGGCGGGCGAACCCGTACAATAAAGGAGTGGTGGACAATTTTGGGGAAATCTTCGGCACAAGCATCCAGGAATCAAAGAACAAGTTTCGGGCACACGTACCTAAAGAACCAGGTCTCGGTGCCCGATCCGTGGGCGGGTTTGTGTCTCCAAACATGGGGAAAGCGGTAGAGGATATTGAAATGGGGCGGAAGGCGGTGTGGAGGGACAGTGGTGCCGAAGTCGATAGCCAGTTCAGCGATAAAGAGGTTGGAATTGGCGGTGAAATGTCACCGGAGATAAGAACGCAAGTGGATGAGGGAGATCGCGCGAATATTGGCCACACGAGAAGGTCCAGTTGGGGGAGGAAAAGCGGGAGCTGGGAAATGTCGCTAGGAAATAGCTCTAAAATTCGGATCAATCATCAGGAATTAAGCATTTTCGGAATTGTTCTTCAAGCTGTTCATCAGGATCATACAATTTCGGCCAGCTCCAAATGGATCCCTCGTCTAGCATCTGCTGATGGTTTCTCGAAATGGAAATTCCGTATCGAGAAACACATCAAGTTTGCTAGTCCTAGAGTCTGGCGTAGCATGATGCGTGGTCCAGTTCAGATAAATGTTAAAAACACAGCCACTGGCGCTGTTACTCCAAAACTCATGGAGGACTACACAGACGACGACTTCGAGAAGGTTGAGGAAGATGAGAAGGCGTTGGCAATTCTCACCATGGCACTGACTCCAGAAATTGCTCAAGGGTTCTGA 2718 44.85 MLSINGEHHGYFDGMRGLRQGCPLSPYLFTLVIEVFNLMFKRRIEEEGGFKYHWRSKEQKLSHLSFVDDLMIFCYGNKASFRIIKDSLEVFAKVAGLKPNLLKSNVKETVQKDLLGILPFAVGKLPMRYLGVPLISTKLFVKDCKSLVDKVKKRVKSWENKSLSYAGRLQLISSVLERYNIKDKVKDFLSDRSWCWTESWVSLIPELLDHPVLALSVSKHDVLKWCKNNGDVVDFSTQQVWKDTQSLVPKLNGVVWFAGHFFGDHSCEIFWDCGLYRFLHAVGRNVVQRGTWQQGVPELQKYLAGVREAYGDQMAAAKSMRVLYHLTVKELRNKSRDSQQVQRVYESDLYHSQLFRVCSQLGIIFAVLCSAIRTFLAQRSAKELVTTAGSQGPKVTPFGTDPDETGLYRASGCVSFIRKPISHLGDLLWCDDVMHIKRMRLVHRGYILMILRTYDDDDDSIVHVLIIGHLRYTGAQSSPTDRLNGRDPDDIPRIPGFIPGPGLGFWPRLAGFQTLQFRRALPFFQKKKKKQPSVPHKNERAMVAQQFTWDDQLLALNLTNERAANLAQIEETEEADQAKDNMKDLQFTFMVSTTPETKEWIMDSEDMTSWKVMLKTPASIVLIMYTFISVWLVGDLTAFHLYLITTNQTTYENFRYRYDRRANPYNKGVVDNFGEIFGTSIQESKNKFRAHVPKEPGLGARSVGGFVSPNMGKAVEDIEMGRKAVWRDSGAEVDSQFSDKEVGIGGEMSPEIRTQVDEGDRANIGHTRRSSWGRKSGSWEMSLGNSSKIRINHQELSIFGIVLQAVHQDHTISASSKWIPRLASADGFSKWKFRIEKHIKFASPRVWRSMMRGPVQINVKNTATGAVTPKLMEDYTDDDFEKVEEDEKALAILTMALTPEIAQGF 905
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tako6g03046 905 PANTHER NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED 3 178 IPR052343 -
Tako6g03046 905 SUPERFAMILY DNA-RNA polymerases 15 199 IPR043502 -
Tako6g03046 905 ProSiteProfiles Reverse transcriptase (RT) catalytic domain profile. 1 134 IPR000477 -
Tako6g03046 905 Coils Coil 141 161 - -
Tako6g03046 905 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 11 133 IPR000477 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tako6g03046 - -