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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tako6g03111 ATGCTGAGAGCCGGAAGCAGGAGGTTAGCTTCTCTCACATCTCCATGGAGGCACCAGACCTCTGCCTCTGCCTCCATCATCTCCAAAAACACTCAGATCGAGGACGCAGCCGACGATCCCCGATCGACTCACGGCCCATCCCCCTTCAACCACCCATTTCGTCCGTTCTCCAGAGGATTTGCTTCAAACTCAATAACTCCAAAATTTGAGGACGCAATCCCACCAACAGTGGCGGCCATCACAAACCCTACTTCCAAAATAGTCTACGATTCTCACAACCACGAGCGCTATCCACCTGGCGACCCGAGCAAACGCGCGTTCGCGTACTTCGTCCTGACAGGTGGCAGATTCGTATACGCCTCCCTCATCCGCCTTCTGGTCCTCAAATTCGTCCTCAGCATGTCCGCCAGTAAAGACGTTCTCGCCCTCGCCTCCCTCGAAGTCGACCTCACCAGCATCGAGCCGGGGTCCACCGTCACGGTCAAGTGGCGCGGAAAGCCCGTGTTCATCAGAAGGCGGACAGAGGACGACGTCAAGCTGGCGAATAGTGTTGACGTGGCGTCTCTGCGGGACCCGCAGGAGGACGCGGCTAGGGTTAAGGATCCTGAGTGGTTGATTGTGGTTGGGGTGTGTACTCACTTGGGGTGTATTCCGTTGCCCAATGCGGGGGATTTTGGGGGGTGGTTTTGCCCGTGTCATGGCTCGCATTATGATATTTCCGGAAGGATCCGGAAGGGGCCTGCGCCGTATAATTTGGAGGTGCCGACTTATAGTTTTATGGAGGACAATAAGTTGCTTATTGGGTGA 807 55.64 MLRAGSRRLASLTSPWRHQTSASASIISKNTQIEDAADDPRSTHGPSPFNHPFRPFSRGFASNSITPKFEDAIPPTVAAITNPTSKIVYDSHNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLTSIEPGSTVTVKWRGKPVFIRRRTEDDVKLANSVDVASLRDPQEDAARVKDPEWLIVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFMEDNKLLIG 268
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tako6g03111 268 Pfam Ubiquinol cytochrome reductase transmembrane region 100 139 IPR004192 GO:0008121(InterPro)
Tako6g03111 268 SUPERFAMILY ISP domain 142 265 IPR036922 GO:0051537(InterPro)
Tako6g03111 268 NCBIfam ubiquinol-cytochrome c reductase iron-sulfur subunit 124 268 IPR006317 GO:0008121(InterPro)
Tako6g03111 268 Gene3D - 137 268 IPR036922 GO:0051537(InterPro)
Tako6g03111 268 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 74 268 IPR014349 GO:0005750(PANTHER)|GO:0006122(PANTHER)|GO:0016491(PANTHER)|GO:0051537(InterPro)
Tako6g03111 268 PRINTS Rieske 2Fe-2S subunit signature 206 217 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Tako6g03111 268 PRINTS Rieske 2Fe-2S subunit signature 240 252 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Tako6g03111 268 PRINTS Rieske 2Fe-2S subunit signature 228 240 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Tako6g03111 268 Pfam Rieske [2Fe-2S] domain 198 253 IPR017941 GO:0051537(InterPro)
Tako6g03111 268 FunFam Cytochrome b-c1 complex subunit Rieske, mitochondrial 138 268 - -
Tako6g03111 268 SUPERFAMILY ISP transmembrane anchor 85 141 - -
Tako6g03111 268 CDD Rieske-cytochrome-bc1 145 268 - -
Tako6g03111 268 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 175 266 IPR017941 GO:0051537(InterPro)
Tako6g03111 268 MobiDBLite consensus disorder prediction 21 49 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tako6g03111 K00411 ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]