AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo2g03616 ATGGTGATGAAACCTGCATGGTTGGAAGGATTAATGGAAGAGAGTTTCTTTGGGATATGTGGGGTCCATGAGAATAAAAGAAAGAATGAGAAGAACATATTTTGCTTGGATTGTTGTCAAAGCTTTTGCCCTCACTGTCTTCCCACTCATCACTCTCACCCACTTCTTCAGGTGAGACGATATGTTTACCAGGATGTTGTTCGATTAGACGACCTCGAAAAGCTCATTGACTGTTCCTTCGTTCAGCCCTATACAATAAACAGTGCAAAAGTAATATTCTTGAACCAGAGGGCACAAAGCAGGTCTTGTAAAGGCCCTGCAAATTCATGCTTCACCTGTGACAGAATCCTTCAAGAACCATTCCATTTCTGCTCGCTTTCTTGCAAGGTTGATCACATGGTGTATCAAGGCGAAGATCTTTCGACAATTTTGTGTAGATTTGATGTGACCGACTTTGCGTTTTCACAATTCGAAGGACTTCGAATGGATGGTTCTGATCACGACGATGGTCAAATCACTCCGAACTCCATTCTTGAAGACTCGTTACAGTTTCAAGATTCTTCAGGAACTTCGTATAAACCGGATGAGAGAAAGAAGAAGAAAAACAGTGATTTTCTTCCTAAATTCTTTTCCTTTGGAAGTAGAAGAAAGGGTGCTCCTCAACGTTCACCGCTTTCTTAA 681 41.41 MVMKPAWLEGLMEESFFGICGVHENKRKNEKNIFCLDCCQSFCPHCLPTHHSHPLLQVRRYVYQDVVRLDDLEKLIDCSFVQPYTINSAKVIFLNQRAQSRSCKGPANSCFTCDRILQEPFHFCSLSCKVDHMVYQGEDLSTILCRFDVTDFAFSQFEGLRMDGSDHDDGQITPNSILEDSLQFQDSSGTSYKPDERKKKKNSDFLPKFFSFGSRRKGAPQRSPLS 226
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo2g03616 226 MobiDBLite consensus disorder prediction 184 226 - -
Tamo2g03616 226 Pfam PLATZ transcription factor 59 130 IPR006734 -
Tamo2g03616 226 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 3 225 - -
Tamo2g03616 226 MobiDBLite consensus disorder prediction 191 205 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo2g03616 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tamo Tamo-Chr2:82077456 Tamo3g04188 Tamo-Chr3:95030408 dispersed
Tamo Tamo-Chr2:82077456 Tamo1g03522 Tamo-Chr1:89102448 transposed
leaf

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Tamo PLATZ 1.4e-26 No_clan TF PLATZ