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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo2g03624 ATGTTGACCAAAAACTATCAGGTTTTAAGGAACATCGGAAAGGGGATTCCACAGCAATCGATGCTCAACATTGTAATGCAATTGAGGAAAGTTTGCAACCACCCGTATCTGATTCCGGGGACGGAACCGGAATCAGGAACTATGGAATTCCTTCACGATATGCGGATCAAAGCATCTGCAAAGCTAACATTACTCCACTCCATGCTCAAAATCTTGAAAAAGGAAGGCCACCGAGTTCTAATCTTTTCACAAATGACAAAACTTCTAGACATTCTGGAAGATTACTTGAACATTGAATTCGGGCGGGAGACTTTCGAAAGAGTTGACGGGTCAGTCTCCATAGCTGACCGCCAGATGGCGATTTCAAGATTCAACAACGATAAATCCCGGTTTGTGTTCTTGTTATCCACAAGATCTTACACGGTTATAATTTATGATTCCGATTTTAACCCTCATGCGGATATTCAAGCCATGAATCGGGCACATAGAATCGGGCAGTCGAATCGGCTTCTTGTGTACAGGCTTGTGGTTAGGGCAAGTGTTGAAGAGAGGATCTTGCAGTTGGCCAAGAAGAAGTTGATGCTTGATCAGCTTTTTGTGAATAAAGGTGGGTCCAGAAGGAGGTGGAGGATATTCTGA 639 43.51 MLTKNYQVLRNIGKGIPQQSMLNIVMQLRKVCNHPYLIPGTEPESGTMEFLHDMRIKASAKLTLLHSMLKILKKEGHRVLIFSQMTKLLDILEDYLNIEFGRETFERVDGSVSIADRQMAISRFNNDKSRFVFLLSTRSYTVIIYDSDFNPHADIQAMNRAHRIGQSNRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKGGSRRRWRIF 212
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo2g03624 212 Gene3D - 1 209 IPR027417 -
Tamo2g03624 212 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 64 206 IPR001650 -
Tamo2g03624 212 SMART helicmild6 90 165 IPR001650 -
Tamo2g03624 212 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 202 IPR027417 -
Tamo2g03624 212 Pfam Helicase conserved C-terminal domain 61 165 IPR001650 -
Tamo2g03624 212 CDD SF2-C-SNF 59 176 IPR049730 -
Tamo2g03624 212 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 1 203 - GO:0000785(PANTHER)|GO:0003677(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0016887(PANTHER)|GO:0042393(PANTHER)|GO:0140658(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo2g03624 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
166533 Tamo2g03624 Tamo3g01376
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tamo Tamo-Chr2:82193685 Tamo7g02415 Tamo-Chr7:53268355 dispersed
Tamo Tamo-Chr2:82193685 Tamo3g04399 Tamo-Chr3:98068229 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tamo1g02709 . 229 726 DDM1 gene family AT5G66750 39.773 4.45e-105 345.0
Tamo1g02981 . 261 395 DDM1 gene family AT5G66750 39.583 4.62e-27 107.0
Tamo1g04603 . 202 503 DDM1 gene family AT5G66750 28.435 5.91e-29 119.0
Tamo2g02849 . 173 511 DDM1 gene family AT5G66750 26.273 1.69e-19 92.4
Tamo2g03624 ACH 488 676 DDM1 gene family AT5G66750 42.268 3.44e-35 129.0
Tamo2g04647 ACH 484 676 DDM1 gene family AT5G66750 29.384 1.65e-13 73.6
Tamo3g03659 . 520 673 DDM1 gene family AT5G66750 39.61 1.80e-26 113.0
Tamo3g04399 . 169 645 DDM1 gene family AT5G66750 39.437 2.20e-94 322.0
Tamo4g00268 . 360 572 DDM1 gene family AT5G66750 30.594 2.79e-20 86.3
Tamo5g02101 . 185 729 DDM1 gene family AT5G66750 41.877 1.14e-118 394.0
Tamo5g03987 . 216 704 DDM1 gene family AT5G66750 25.0 1.65e-22 102.0
Tamo6g00317 . 319 673 DDM1 gene family AT5G66750 28.0 1.51e-23 105.0
Tamo6g00906 . 202 452 DDM1 gene family AT5G66750 27.376 9.45e-14 72.4
Tamo6g03605 . 541 665 DDM1 gene family AT5G66750 43.2 6.29e-27 112.0
Tamo6g03608 . 306 660 DDM1 gene family AT5G66750 30.348 2.46e-49 182.0
Tamo7g01920 . 196 726 DDM1 gene family AT5G66750 44.03 1.00e-129 410.0
Tamo7g02415 . 202 739 DDM1 gene family AT5G66750 43.727 1.88e-142 439.0
Tamo7g02576 . 166 673 DDM1 gene family AT5G66750 30.851 1.57e-68 246.0
Tamo8g01434 . 217 659 DDM1 gene family AT5G66750 22.629 1.65e-14 76.3
Tamo8g01497 . 476 690 DDM1 gene family AT5G66750 40.93 3.15e-41 159.0