AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tamo4g02117 | ATGATAACGACGATGTTTGCTCGCACAATTCATCGCAGATTCAGTTTTCACCACTCTTCAATCTCACTCTCGAACTCATTACGTGGCAACAACAGCCACTTCCCCACGAATCTTCTTCGTCGCGAGATGAGCATGGAAACAGAACGTATTGTTGATCGGCTCAAGAGTTCTGGGCTATTGCAAACGAAGGGGCTTATTGGAGGGAAGTGGACTGATGCTTATGATGGGAAGACCATTGAGGTTAACAATCCTGCTAGTGGTGATGTTATAGCCTCTGTTGCATGCATGGGAGAGAGGGAAACAAAAGATGCAATTTCTTCAGCTTATGATGCTTTTAGCCATTGGAGCAAGCTTACTGCAAATGACAGAAGTAGCCGCCTACGTAACTGGTACAATTTGTTGCTTCAACATAAAGAAGAACTTGGACAACTCATAACTTTAGAGCAAGGAAAGCCTCTAAAAGAAGCCATTGGGGAGGTTGGATATGGGGCTAGTTTCATTGAGTTTTTTGCAGAGGAGGCAAAACGTATTTATGGTGATATAATTCCATCAACACTCTCTGATCGTCGCTTGTTTGTTCTAAAACAGCCTGTTGGTGTGGTTGCTGCAATCACTCCATGGAATTTCCCATTGGCCATGATTGCTAGAAAAGTGGGACCCGCTCTTGCGTGTGGATGTACTGTAGTCATTAAGCCCTCTGAGCTTACACCACTGACCGCCTTAGCAGCTGCTGAGCTGGCACTTCAGTCTGGAATCCCACCTGGTGTCTTGAATGTAGTTATGGGAGATGCCATCAAAATTGGAACAGCGTTAACTGAAAGCCCACAGGTGAGAAAGATAACATTTACCGGTTCAACAGCTGTTGGAAAGAAATTAATGGCGGGTTCAGCTGATACTGTTAAAAAGGTATCTCTTGAACTTGGTGGTAATGCACCTTGCATTGTCTTTGATGATGCTGACCTGGAAGTCGCGATAAAAGGAAGCTTGGCAACCAAATTCCGTAACAGTGGACAAACATGTGTATGTGCAAATAGAATACTTGTGCAAGAAGGCATATACGAGAAATTTACAAAAGCTTTTTCGGATGCTGTTCAAAACCTTAAAGTTGGCAATGGTCTTTCCGAAGGTGTATCACAGGGCCCACTAATCAACGAGGCTGCTGTAAAAAAGGTTGAATCATTTGTAGAAGATGCTGTCTCAAAGGGAGCAAAACTTTTACTAGGGGGTAAAAGGCATAGTCTTGGAATGTCCTTTTATGAGCCTACAGTCATAGGCGATGTGAAAAACGAGATGCTCATAGCACAACAGGAAGTATTTGGACCTGTTGCACCTGTTTTACGGTTTAAAACCGAAGAAGAAGCTATACAAATTGCTAATGACACCAATGCAGGATTAGCGGCTTATATATTTACAAACAGTATAAAGCGATCCTGGCGAGTGTCAGAAGCTCTTGAATATGGTATTGTTGGAGTTAACGAAGGATTGGTTTCAACAGAGGTGGCTCCTTTTGGAGGGTTTAAGCAGTCGGGTCTAGGTCGTGAAGGTTCCAAATATGGAATGGATGACTATCTTGAAATCAAGTACATATGTATGGGAAATATGGGGTGA | 1608 | 43.1 | MITTMFARTIHRRFSFHHSSISLSNSLRGNNSHFPTNLLRREMSMETERIVDRLKSSGLLQTKGLIGGKWTDAYDGKTIEVNNPASGDVIASVACMGERETKDAISSAYDAFSHWSKLTANDRSSRLRNWYNLLLQHKEELGQLITLEQGKPLKEAIGEVGYGASFIEFFAEEAKRIYGDIIPSTLSDRRLFVLKQPVGVVAAITPWNFPLAMIARKVGPALACGCTVVIKPSELTPLTALAAAELALQSGIPPGVLNVVMGDAIKIGTALTESPQVRKITFTGSTAVGKKLMAGSADTVKKVSLELGGNAPCIVFDDADLEVAIKGSLATKFRNSGQTCVCANRILVQEGIYEKFTKAFSDAVQNLKVGNGLSEGVSQGPLINEAAVKKVESFVEDAVSKGAKLLLGGKRHSLGMSFYEPTVIGDVKNEMLIAQQEVFGPVAPVLRFKTEEEAIQIANDTNAGLAAYIFTNSIKRSWRVSEALEYGIVGVNEGLVSTEVAPFGGFKQSGLGREGSKYGMDDYLEIKYICMGNMG | 535 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tamo4g02117 | 535 | NCBIfam | succinate-semialdehyde dehydrogenase | 81 | 527 | IPR010102 | GO:0009013(InterPro)|GO:0009450(InterPro) | |
| Tamo4g02117 | 535 | Pfam | Aldehyde dehydrogenase family | 70 | 529 | IPR015590 | GO:0016491(InterPro) | |
| Tamo4g02117 | 535 | FunFam | Succinate-semialdehyde dehydrogenase I | 76 | 321 | - | - | |
| Tamo4g02117 | 535 | FunFam | Aldehyde dehydrogenase, putative | 501 | 527 | - | - | |
| Tamo4g02117 | 535 | ProSitePatterns | Aldehyde dehydrogenases glutamic acid active site. | 305 | 312 | IPR029510 | GO:0016491(InterPro) | |
| Tamo4g02117 | 535 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 2 | 309 | 498 | IPR016163 | GO:0016620(InterPro) | |
| Tamo4g02117 | 535 | CDD | ALDH-F5-SSADH-GabD | 81 | 531 | - | - | |
| Tamo4g02117 | 535 | PANTHER | SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL | 54 | 534 | IPR050740 | GO:0004777(PANTHER)|GO:0006807(PANTHER)|GO:0009450(PANTHER) | |
| Tamo4g02117 | 535 | FunFam | Succinate-semialdehyde dehydrogenase I | 309 | 498 | - | - | |
| Tamo4g02117 | 535 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 1 | 76 | 523 | IPR016162 | GO:0016491(InterPro) | |
| Tamo4g02117 | 535 | SUPERFAMILY | ALDH-like | 43 | 532 | IPR016161 | GO:0016491(InterPro) | |
| Tamo4g02117 | 535 | ProSitePatterns | Aldehyde dehydrogenases cysteine active site. | 333 | 344 | IPR016160 | GO:0016491(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tamo4g02117 | K17761 | succinate-semialdehyde dehydrogenase, mitochondrial [EC:1.2.1.24] | ||||
| Tamo4g02117 | K00135 | succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Tamo | Tamo-Chr1:111617105 | Tamo4g02117 | Tamo-Chr4:34393758 | dispersed | |
| Tamo | Tamo-Chr3:19590459 | Tamo4g02117 | Tamo-Chr4:34393758 | dispersed | |
| Tamo | Tamo-Chr3:83460908 | Tamo4g02117 | Tamo-Chr4:34393758 | dispersed | |
| Tamo | Tamo-Chr4:34393758 | Tamo5g02609 | Tamo-Chr5:54239287 | dispersed | |
| Tamo | Tamo-Chr4:34393758 | Tamo5g01180 | Tamo-Chr5:16033600 | transposed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Tamo1g00648 | . | 74 | 545 | Aldehyde Dehydrogenase gene family | AT3G66658 | 82.203 | 0.0 | 832.0 | |
| Tamo1g00926 | . | 269 | 401 | Aldehyde Dehydrogenase gene family | AT2G14170 | 50.365 | 3.03e-26 | 100.0 | |
| Tamo1g01658 | ACH | 4 | 484 | Aldehyde Dehydrogenase gene family | AT4G36250 | 54.47 | 0.0 | 561.0 | |
| Tamo1g03703 | ACH | 148 | 501 | Aldehyde Dehydrogenase gene family | AT3G24503 | 64.407 | 4.22e-179 | 504.0 | |
| Tamo1g03704 | . | 1 | 501 | Aldehyde Dehydrogenase gene family | AT3G24503 | 68.191 | 0.0 | 710.0 | |
| Tamo1g04730 | ACH | 84 | 593 | Aldehyde Dehydrogenase gene family | AT2G14170 | 68.824 | 0.0 | 741.0 | |
| Tamo2g03355 | . | 66 | 144 | Aldehyde Dehydrogenase gene family | AT4G36250 | 56.962 | 2.22e-26 | 99.4 | |
| Tamo2g04449 | . | 1 | 382 | Aldehyde Dehydrogenase gene family | AT3G48000 | 75.711 | 0.0 | 611.0 | |
| Tamo2g04689 | ACH | 1 | 386 | Aldehyde Dehydrogenase gene family | AT4G36250 | 54.922 | 3.75e-158 | 452.0 | |
| Tamo3g01006 | . | 6 | 484 | Aldehyde Dehydrogenase gene family | AT4G36250 | 61.169 | 0.0 | 629.0 | |
| Tamo3g02577 | ACH | 25 | 556 | Aldehyde Dehydrogenase gene family | AT5G62530 | 77.444 | 0.0 | 898.0 | |
| Tamo3g03390 | . | 116 | 538 | Aldehyde Dehydrogenase gene family | AT3G48000 | 81.797 | 0.0 | 753.0 | |
| Tamo3g04354 | . | 66 | 161 | Aldehyde Dehydrogenase gene family | AT4G36250 | 57.292 | 6.87e-34 | 122.0 | |
| Tamo4g02117 | . | 32 | 525 | Aldehyde Dehydrogenase gene family | AT1G79440 | 77.328 | 0.0 | 800.0 | |
| Tamo4g02282 | . | 211 | 367 | Aldehyde Dehydrogenase gene family | AT3G48000 | 73.885 | 1.44e-80 | 245.0 | |
| Tamo4g03496 | ACH | 75 | 606 | Aldehyde Dehydrogenase gene family | AT2G14170 | 82.022 | 0.0 | 906.0 | |
| Tamo5g01180 | ACH | 3 | 501 | Aldehyde Dehydrogenase gene family | AT3G24503 | 66.934 | 0.0 | 704.0 | |
| Tamo5g02609 | . | 32 | 113 | Aldehyde Dehydrogenase gene family | AT1G79440 | 60.976 | 4.39e-31 | 113.0 | |
| Tamo7g02750 | . | 1 | 157 | Aldehyde Dehydrogenase gene family | AT2G24270 | 77.215 | 1.49e-84 | 256.0 | |
| Tamo8g00236 | ACH | 7 | 556 | Aldehyde Dehydrogenase gene family | AT5G62530 | 79.091 | 0.0 | 935.0 | |
| Tamo8g00734 | . | 88 | 134 | Aldehyde Dehydrogenase gene family | AT4G36250 | 65.957 | 1.03e-14 | 67.0 |