AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tamo4g02119 | ATGAATAGTAATCCAGCTACGCCGATGAACGCACACGCTCCGTCATCAAGCTCCGGTGGTGCTGGATCCCCTGATTCATCTGCTGCAAGGAGAAATTCCAAGCGACCTAAATATTCCAGGTTTACTCAACAAGAACTTCCAGCTTGCAAGCCAATTCTCACTCCAAAATGGGTGATTTCAGCATTCATGCTTGTAACCATAGTCTTCATACCAATCGGACTTGCTTCCCTCTTCGCCTCTCGTGACGTAGTTGAAATTATCGAGCGATACGACAACGCCTGCGCACCACCAGGTATGTCAAAAAGTCAAAAAGTCGAATTCATCCAATCCAATCAAAACAAAACGTGCGTCAGAACCTTAACAGTCACAAAGCGTATGAAGCAACCTATATACGTCTACTATCAACTCGACAATTTCTACCAAAACCATCGAAGATACGTAAAAAGCCGAAGTGATCAGCAATTAAGAAACCGTGGTGATGAAAACGACACGAGTACATGTAAGCCTGAACACAATGCAAATGGGATGCCGATTGTGCCATGTGGACTGGTGGCGTGGAGTTTGTTCAATGACACGTATGCATTTTCATCTAGTAACAACCCGCAATTGAACGTGAACAAGAGACATATTTCATGGAAAAGTGATCGGGAGGATAAGTTTGGGAGTGATGTGTTTCCGAAAAATTTCCAGAATGGAAATATTATTGGTGGTGCAAGACTTAATGAATCTATTCCGTTAAGTGAGCAAGAAGATCTTATTGTATGGATGCGAACCGCAGCCCTCCCAACATTTAGAAAGTTATATGGGAAAATAGAAGTGGATCTTCAAGCAGGCGAAACTATAAATGTTGTGGTACAAAATAACTACAACACTTATAGTTTTAGTGGAAAGAAGAAACTTGTGCTTTCAACTACAAGTTGGCTTGGTGGGAAAAATAACTTTATTGGTATCGCGTATCTTGCGGTTGGTGGATTGTGCTTCTTGCTAGCTACGGTTTTCACCATCATATATTTATTTAAACCAAGGCATCTTGGAGACCCGACTTATTTGTCATGGAACAGAAACCCGGGCGGTCATTAA | 1080 | 41.94 | MNSNPATPMNAHAPSSSSGGAGSPDSSAARRNSKRPKYSRFTQQELPACKPILTPKWVISAFMLVTIVFIPIGLASLFASRDVVEIIERYDNACAPPGMSKSQKVEFIQSNQNKTCVRTLTVTKRMKQPIYVYYQLDNFYQNHRRYVKSRSDQQLRNRGDENDTSTCKPEHNANGMPIVPCGLVAWSLFNDTYAFSSSNNPQLNVNKRHISWKSDREDKFGSDVFPKNFQNGNIIGGARLNESIPLSEQEDLIVWMRTAALPTFRKLYGKIEVDLQAGETINVVVQNNYNTYSFSGKKKLVLSTTSWLGGKNNFIGIAYLAVGGLCFLLATVFTIIYLFKPRHLGDPTYLSWNRNPGGH | 359 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tamo4g02119 | 359 | PIRSF | Lem3-Cdc50 | 7 | 355 | IPR005045 | GO:0016020(InterPro) | |
| Tamo4g02119 | 359 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - | |
| Tamo4g02119 | 359 | Pfam | LEM3 (ligand-effect modulator 3) family - CDC50 family | 77 | 342 | IPR005045 | GO:0016020(InterPro) | |
| Tamo4g02119 | 359 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
| Tamo4g02119 | 359 | MobiDBLite | consensus disorder prediction | 149 | 167 | - | - | |
| Tamo4g02119 | 359 | MobiDBLite | consensus disorder prediction | 149 | 171 | - | - | |
| Tamo4g02119 | 359 | PANTHER | CELL CYCLE CONTROL PROTEIN 50 | 27 | 351 | IPR005045 | GO:0005783(PANTHER)|GO:0005794(PANTHER)|GO:0005886(PANTHER)|GO:0016020(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tamo4g02119 | K26935 | cell cycle control protein 50 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Tamo | Tamo-Chr4:34419973 | Tamo8g02573 | Tamo-Chr8:40633176 | dispersed | |
| Tamo | Tamo-Chr5:73928063 | Tamo4g02119 | Tamo-Chr4:34419973 | transposed | |
| Tamo | Tamo-Chr6:20841993 | Tamo4g02119 | Tamo-Chr4:34419973 | transposed | |
| Tamo | Tamo-Chr6:81216799 | Tamo4g02119 | Tamo-Chr4:34419973 | transposed | |
| Tamo | Tamo-Chr8:13680987 | Tamo4g02119 | Tamo-Chr4:34419973 | transposed | |
| Tamo | Tamo-Chr2:36609204 | Tamo4g02119 | Tamo-Chr4:34419973 | wgd |