AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo4g02184 ATGGCCTTTATTTCCAAGGTTCACAACTTCTCCGGCGACTTTCAAACTCCGACAACCACCCCACAAATGTGGTTTGATCATGAGACTACTTCACCCGGTTTTTTTGACAACTATGGGATGATGACAATGCCACCGGAATATGACATCATCACCACACCTTTATCTCGATCATCTTCATGGAAGACTTCATTCCCAGAGAGATTTGGGGTTTCTGATGTGATGGTGGTTCCAACATCGCCTACTACCGGATATAGTGGTATTCCTCCCGGAACCGATTATCAGAAAGTTGAAATAGATGACTTTTTTTGTAGCAATGGCACCAACTCATGGCTGTCGGCTTATCCGGTTGCAAACACCAATTGGGAGATCGAAAACCAGAAGAGTAGTTCAGAAATCGAAGAACCTACATTGAAGATCGGTAGGTATTCGGTGGAAGAAAGGAAAGACAAGATCATGAAGTATCTTAAAAAGAGAAATCAAAGGAACTTCAACAAGACGATTAAGTATGAATGCCGAAAAACGTTAGCCGACAAGCGAATACGAGTTCGAGGTAGGTTTGCAAAGAACAAAAACGATCACCATCTTCATGATCATAGTCAACCATGTGAAGATCAAGTGCTCCCCAACATCAATAATAGCAATCCTTGTGAACAAGACATTCAACAACAATACACCAATACTTTATGA 687 41.48 MAFISKVHNFSGDFQTPTTTPQMWFDHETTSPGFFDNYGMMTMPPEYDIITTPLSRSSSWKTSFPERFGVSDVMVVPTSPTTGYSGIPPGTDYQKVEIDDFFCSNGTNSWLSAYPVANTNWEIENQKSSSEIEEPTLKIGRYSVEERKDKIMKYLKKRNQRNFNKTIKYECRKTLADKRIRVRGRFAKNKNDHHLHDHSQPCEDQVLPNINNSNPCEQDIQQQYTNTL 228
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo4g02184 228 MobiDBLite consensus disorder prediction 204 228 - -
Tamo4g02184 228 Pfam CCT motif 147 189 IPR010402 GO:0005515(InterPro)
Tamo4g02184 228 ProSiteProfiles CCT domain profile. 147 189 IPR010402 GO:0005515(InterPro)
Tamo4g02184 228 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 54 200 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(PANTHER)|GO:0009909(InterPro)
Tamo4g02184 228 MobiDBLite consensus disorder prediction 190 228 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo4g02184 K03539 ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tamo Tamo-Chr4:35991450 Tamo8g02066 Tamo-Chr8:28050380 dispersed
Tamo Tamo-Chr4:35991450 Tamo2g03255 Tamo-Chr2:76606392 transposed
leaf

Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tamo4g00507 . 287 403 COL gene family AT1G25440 42.735 2.16e-20 86.3
Tamo4g01771 ACH 305 349 COL gene family AT3G21880 51.111 5.97e-09 53.5
Tamo4g02184 . 382 426 COL gene family AT1G28050 51.111 6.99e-09 53.5
Tamo5g00353 ACH 273 392 COL gene family AT1G73870 32.5 2.67e-09 56.6
Tamo6g01409 . 3 403 COL gene family AT1G25440 45.657 7.07e-102 308.0
Tamo7g00179 . 3 403 COL gene family AT1G25440 44.651 2.75e-87 269.0
Tamo7g01691 ACH 268 403 COL gene family AT1G25440 43.262 7.76e-21 92.0
leaf

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Tamo CCT 3e-17 CL0281 TR Others