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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo4g02271 ATGAAGCTTGTCAGGTTTTTGATGAAGTTGAACAACGAAACTGTTTCGATCGAGCTCAAGAATGGCACAGTTGTACACGGAACCATCACAGGTGTTGATATTAGTATGAACACACACTTGAAGACGGTGAAGTTGACACTGAAAGGGAAAAATCCAGTAACCCTTGACCACTTGAGTGTTAGAGGCAATAATATTCGTTACTATATACTTCCCGACAGCTTGAATTTGGAGACTTTGCTAGTGGAAGAGACTCCTAGAGTCAAGCCCAAGAAACCCACCGCAGGTTGTACCTTTTTTATCCTAAAGATATCAGTCTCTGTGTCACTGTCACTGTTACTGTCAGAGTCAATTACAGTGTTCTAA 363 41.32 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGCTFFILKISVSVSLSLLLSESITVF 120
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo4g02271 120 SMART Sm3 5 70 IPR001163 -
Tamo4g02271 120 CDD Sm-D1 2 93 IPR034102 GO:0000387(InterPro)
Tamo4g02271 120 FunFam Small nuclear ribonucleoprotein Sm D1 1 82 - -
Tamo4g02271 120 Gene3D - 50 82 - -
Tamo4g02271 120 Gene3D - 1 49 - -
Tamo4g02271 120 Pfam LSM domain 5 69 IPR001163 -
Tamo4g02271 120 SUPERFAMILY Sm-like ribonucleoproteins 4 91 IPR010920 -
Tamo4g02271 120 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM 1 94 IPR027141 GO:0000243(PANTHER)|GO:0000387(PANTHER)|GO:0003723(PANTHER)|GO:0005682(PANTHER)|GO:0005685(PANTHER)|GO:0005686(PANTHER)|GO:0005687(PANTHER)|GO:0005689(PANTHER)|GO:0006396(InterPro)|GO:0034715(PANTHER)|GO:0034719(PANTHER)|GO:0071011(PANTHER)|GO:0071013(PANTHER)|GO:0097526(PANTHER)
Tamo4g02271 120 ProSiteProfiles Sm domain profile. 2 74 IPR047575 GO:0003723(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo4g02271 K11087 small nuclear ribonucleoprotein D1
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tamo Tamo-Chr4:1938983 Tamo4g02271 Tamo-Chr4:38185975 dispersed
Tamo Tamo-Chr4:38185975 Tamo7g02516 Tamo-Chr7:55518815 dispersed