AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo4g02279 ATGGCAGAAATTGCAGGAAAGCAAGCACATCTTATGTCGATGAATACAAGTAATATGAAGGAAAAATGGGTGAAACATTACTCCTCAAATCACCAGATATTGCTGGTTGGAGAAGGAGACTTCTCTTTTTCGCTGAGTTTGGCTATGGCTTTCGGCTCTGCTTCAAACCTTGTGGCATCCTCTCTCGATTCTTATGATGCTCTTATCAAGAAGTACAATGGCGTAAAATCAAACTTGGAAATCCTACGCCATTTTGGAGCTCAACTATTACACGGAGTTGATTCACTTAACATGAAATTTCATATTGATCTTTCAACACGAAAATTTAACCGGATCGTATATAATTTCCCACATGCGGGCTTCCTAGGGAAGGAAACCGATCACTTGGTCATCATGATACACAGAAATTTGATCCGTGGATTCTTCATGAACGCAATTGACCTGTTGCTTCCAAACGGTGAAATTCATGTAACACACAAGACTGCACACCCGTTTGACACTTGGAATATCGAAGAATTAGCAACTCAAAGTTGTTTAGCATTGCTAGAATGTGTCGAATTCAAGATAGAAGATTATCCCGGTTATAACAACAAAAGAGGAGATGGTACCAATCCTGACGAATCTTTTCCTCTAGGAAAGTGTAGTACTTTTAAATTTATATTGTCTTCAAAAAGCAAGAAATCCATTATTTCAGATAAGAACCCTCGAGAACCTCAAGAAATTCCATTAAGAAAGGAAAATGTGGAGAGGACTTTGAATCCTTCCCAAGATATGATGGAAAACATGGAATGCTTTTGGATTTTTAGAGAGTATTTTTGTCATTTGGGTTTAAGGTTCGGGCAAACCGATGAGGATCTTCACGGTTCTGTTAAGGAGATGCTAAAACTCGGGTTTCAAAGATATCATGATGAGAATCATGGAAAAAATGTGGATGGTTACGTAAATCTTTTAGTAGAGCTTCGGGATTTAAGTAAACAAAGGGTGGCTTTCTTGCGAAAATGGTTGTTAGAAAGTGATGACCGGGTTCAAATGTGA 1035 38.36 MAEIAGKQAHLMSMNTSNMKEKWVKHYSSNHQILLVGEGDFSFSLSLAMAFGSASNLVASSLDSYDALIKKYNGVKSNLEILRHFGAQLLHGVDSLNMKFHIDLSTRKFNRIVYNFPHAGFLGKETDHLVIMIHRNLIRGFFMNAIDLLLPNGEIHVTHKTAHPFDTWNIEELATQSCLALLECVEFKIEDYPGYNNKRGDGTNPDESFPLGKCSTFKFILSSKSKKSIISDKNPREPQEIPLRKENVERTLNPSQDMMENMECFWIFREYFCHLGLRFGQTDEDLHGSVKEMLKLGFQRYHDENHGKNVDGYVNLLVELRDLSKQRVAFLRKWLLESDDRVQM 344
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo4g02279 344 Pfam rRNA (uridine-N3-)-methyltransferase BTM5-like 34 199 IPR019446 GO:0070042(InterPro)|GO:0070475(InterPro)
Tamo4g02279 344 FunFam Os09g0479300 protein 31 182 - -
Tamo4g02279 344 PANTHER PHENYLALANYL-TRNA SYNTHETASE 17 210 - GO:0005737(PANTHER)|GO:0070042(PANTHER)|GO:0070475(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo4g02279 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tamo Tamo-Chr4:38280267 Tamo4g02279 Tamo-Chr4:38353738 dispersed
Tamo Tamo-Chr4:38298099 Tamo4g02279 Tamo-Chr4:38353738 proximal