AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo4g02293 ATGGATACAGTACATGCAGTGGAACAGACCTCTGTACCATGGACTTCTGATCCACTTACACAAACAGAAAGTACAGATTCAGGATGGAAAATGGTGTTACATGAGGAGAGTAATTCGTATTATTACTGGAACACTTTGACTGGTCAAACTTCTTGGGAAGTTCCTGTTGACTTTGTTGACCTGGTTCAAGGAAACGGACCAGAACCAAAACCACAACCAGTCTATGATCCTCAATCGGTTACAGTAGTTGAAGAAATGCATGTTGATACACAACCGAATGATAGGTCCACTGAATCTTTGCCTTTTGAGGCCATGGAAAATGACGGTTATAGGCCTGAATCAGATATCATGTCACATGATGGGGTCAAGGGTGATTATGTCAATACAACAGATGCTTTGAGTAATGGGGAATGGGAAGCCCAATATTCTGATTCTTATCGGCTTTTGGAAATTGGTGAAAGTTTATTAGAAAGATTAAAATCATTGAAAGTGGAAAGTCAACAGAAGTTAAAGTTAATGATTGAGCTTGATATAAGACTTGCAGACATTAAGTCATTAGTATGTTACGGATCATCTTTGCTTCCTTTCTGGCTGCATTCTGAAAACCATTTGAGAAAACTAGAAACCGCCATCAACAATGAGATTCTAGAACATTCTCAGTTTCCAAATAATGGTGAAACAGCTGAAAAGGCAGACAATAAGATACAAGAAAAAGAAAATGAAAAAGAAAAAGAAAAGGAAGTTATAGTAGATGCAGATGCAGATGCAGATGATGACATGGATGTTGAAATGGAGGTTGAAGATGATCATGATGATGACTCACTAGCCCAAAACGGGCCCCACTATGAAAAAGAAGAAGGAGAAATAGAGGTACCAATACCACCTCCACCTAATGATGAGTGGGTCCCACCACCACCACCACCACCACCGGATGATGAACAGCCGCCTCCACCGCCGCCAGGTGACACCACATTCGTTCCACCACCACCACAGGCTGCCGGCTACACATATGGAGAAGAATATAATTTTGCATATGCGGGACCCAATATCGACTACTATGGTCAACAAGTCCAAAATCATGAGTATTATGTAGATGCTACTGGATGCCAGCTGGCTGCTCCAATCCCTACTCTTTATTACACAACAGTGCAGAATCCGTATCCAGATGAGTGGGTCCCACCTCCATTACCAACTTGTACTACTTCTACTGTGACTGCTCCAACAGAACCAGTTCCTAAGGTTCAACCTAAAGTTGCAAGAAACAAAAAACGTACGGTTGCTACAGTGCCTGGTTTAAGGTCTAACAAGAAAGTTTCAGGCTTGGTGGATAAGTGGAAGGCTGTTAAAGAGGAATTGCATGAAGATGAGGAAGATGATGAACCTGAAAATGCTTTAGAATTTTTGGAGAAGAAAAAGAAACGGGAGATTGAGCAATGGCATGCACAGCAGATTGCAACTGGAGAAGCCAAAGACAACGCTAATTTTCAACCTCTTGGTGGTGATTGGAGGGAGAGAGTTAGAAGGAAGAGAGCTAAAAAGTCAACTGAAGCTGAAGAACATCAAACCAATCCCAAGGGCATTGATGACATTAACCAAAAGCCTGATCTTGTACAACTTACAAAACAACTCCCATCTGGTTGGCAGGCATATTGGGATGAAGCATCAAAGCAGGTTTATTATGGGAACTCAAAAACATCAGAAACTTCATGGACTAAACCTAAAGTTTAA 1728 41.38 MDTVHAVEQTSVPWTSDPLTQTESTDSGWKMVLHEESNSYYYWNTLTGQTSWEVPVDFVDLVQGNGPEPKPQPVYDPQSVTVVEEMHVDTQPNDRSTESLPFEAMENDGYRPESDIMSHDGVKGDYVNTTDALSNGEWEAQYSDSYRLLEIGESLLERLKSLKVESQQKLKLMIELDIRLADIKSLVCYGSSLLPFWLHSENHLRKLETAINNEILEHSQFPNNGETAEKADNKIQEKENEKEKEKEVIVDADADADDDMDVEMEVEDDHDDDSLAQNGPHYEKEEGEIEVPIPPPPNDEWVPPPPPPPPDDEQPPPPPPGDTTFVPPPPQAAGYTYGEEYNFAYAGPNIDYYGQQVQNHEYYVDATGCQLAAPIPTLYYTTVQNPYPDEWVPPPLPTCTTSTVTAPTEPVPKVQPKVARNKKRTVATVPGLRSNKKVSGLVDKWKAVKEELHEDEEDDEPENALEFLEKKKKREIEQWHAQQIATGEAKDNANFQPLGGDWRERVRRKRAKKSTEAEEHQTNPKGIDDINQKPDLVQLTKQLPSGWQAYWDEASKQVYYGNSKTSETSWTKPKV 575
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo4g02293 575 SMART ww-5 24 57 IPR001202 GO:0005515(InterPro)
Tamo4g02293 575 SMART ww-5 542 575 IPR001202 GO:0005515(InterPro)
Tamo4g02293 575 MobiDBLite consensus disorder prediction 273 290 - -
Tamo4g02293 575 Pfam WW domain 27 55 IPR001202 GO:0005515(InterPro)
Tamo4g02293 575 Pfam WW domain 543 573 IPR001202 GO:0005515(InterPro)
Tamo4g02293 575 MobiDBLite consensus disorder prediction 1 24 - -
Tamo4g02293 575 MobiDBLite consensus disorder prediction 218 334 - -
Tamo4g02293 575 SUPERFAMILY WW domain 538 573 IPR036020 GO:0005515(InterPro)
Tamo4g02293 575 Coils Coil 503 523 - -
Tamo4g02293 575 ProSiteProfiles WW-rsp5-WWP domain profile. 541 575 IPR001202 GO:0005515(InterPro)
Tamo4g02293 575 ProSitePatterns WW-rsp5-WWP domain signature. 29 55 IPR001202 GO:0005515(InterPro)
Tamo4g02293 575 PANTHER OS06G0298400 PROTEIN 121 243 - -
Tamo4g02293 575 Gene3D - 19 63 - -
Tamo4g02293 575 Coils Coil 228 255 - -
Tamo4g02293 575 MobiDBLite consensus disorder prediction 252 272 - -
Tamo4g02293 575 CDD WW 27 57 IPR001202 GO:0005515(InterPro)
Tamo4g02293 575 Gene3D - 538 575 - -
Tamo4g02293 575 CDD WW 544 573 IPR001202 GO:0005515(InterPro)
Tamo4g02293 575 MobiDBLite consensus disorder prediction 501 526 - -
Tamo4g02293 575 MobiDBLite consensus disorder prediction 230 251 - -
Tamo4g02293 575 SUPERFAMILY WW domain 21 57 IPR036020 GO:0005515(InterPro)
Tamo4g02293 575 MobiDBLite consensus disorder prediction 291 327 - -
Tamo4g02293 575 ProSitePatterns WW-rsp5-WWP domain signature. 547 573 IPR001202 GO:0005515(InterPro)
Tamo4g02293 575 ProSiteProfiles WW-rsp5-WWP domain profile. 23 57 IPR001202 GO:0005515(InterPro)
Tamo4g02293 575 MobiDBLite consensus disorder prediction 486 534 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo4g02293 K24774 formin-binding protein 4
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tamo Tamo-Chr4:38566785 Tamo4g02298 Tamo-Chr4:38620462 proximal