AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo4g02423 ATGGGTTGGAGAAATGGAGGCGAATTACAACACGAAGAAGACGAAAGAAGATCAATATCATCATCGCCACTTGTAAACGACGCGTTGCTTTTAACCACCATGTGTATCATTGGCCTTTCTGTTGACGTTCACATCAAGGATGGGTCTATCTATTCTGGGATCTTCCACACTGCTTGTGTCGACGACCGTTATGCTATTGTATTGAAGCAAGCAAGAATGATAAAGAAAGGGAGTTGTGATTCAAATGTGGCTAATGAAGGGGTGATAGGAACACTTATAATCCAATCAGAAGATCTTGTACAAGTGGTTGCAAAGAGAGTATTGCTTCCTGCAAATGGTTTTGCTGGACATGAGACTGGAGATGATACAGGGGCGGTTGCATGCTCTTTCCCTTCTAATGGAAATCAATTGACCGAAGGAAATAAAACAATCCCCAAAAAGTCAAATGTTGACCAACCTCATGCTAGTCAAACAAAATGCTTGTCTGGAACTGAGAACGGGTTTCCTATTCATTCAAGCAATCTTCTTGAAGTCAATAAAAATACAGATGCTAAAGTTTCAACAAAGAAGGAAGAAGCTTTGATGGATTCGGACAATAACAATAACAATAACAATAACAGAAAGAACGGAAGTTATCATAGTAATGGTGTGAAGACCGAAAACCAAAAGGAATCAATTGTCAGCTCATCATCAACTCCAACCGAAACGGTCACTTCAAAAATCCCAAATTCTAATCGAACTACCAAGGAATTTAAACTTAACCCTGGAGCAAAGATATTTTCACCATCGTTTCCAAATAAGAGACCACCTACTTCTCCGGTGATTCCTGCCGGAGCAAATCTTGCATATGTTCCCGACGGTTATCCGGCGGTTCAGGTGGCGGCACCACCGCCGGAAGTTGAAATTGGACCGTATGCTCCTCGTTCTTTACCGGTTAAGTTTGTTCCGTATGGTAACGTACTTTCAGGGAATGGAGGCGGCGATGTTCAACATCCTCCGCCTGTTCTTGGATATATGGCGAATAGGGCTCCGCCAGCTAGATATGTTGGTCAATATCATCCGGTTCAAACCACGCCAACTTTTGTCCAACCGGGATCCCCGAATGTAATGGTTGGAAGATTTGGACCGGTCGTTTATGTTCATCCAGTCTCTCAAGATATGGTCCCGAGCACCACGAGTTTCTCTCAAGTGAATACATGCTCTATCTTGACTCCTCATCAAGTCCATGTACCTAAACACCAAGGAACTGCGGCGGCTCAAGCATTGCAGCTATGTGGAGGACCACCATATATAGCCACCGCGGGTGGTGGTCAAACACCATTTATGTTACCGGGCCACATTCCCATTTCACAACCGCCTTACCCTATGATCCGCCCAATGCCGGTCCCCGGATCTAATGGTTTTTTGGTATCAAAGTTTTCTTGA 1425 44.0 MGWRNGGELQHEEDERRSISSSPLVNDALLLTTMCIIGLSVDVHIKDGSIYSGIFHTACVDDRYAIVLKQARMIKKGSCDSNVANEGVIGTLIIQSEDLVQVVAKRVLLPANGFAGHETGDDTGAVACSFPSNGNQLTEGNKTIPKKSNVDQPHASQTKCLSGTENGFPIHSSNLLEVNKNTDAKVSTKKEEALMDSDNNNNNNNNRKNGSYHSNGVKTENQKESIVSSSSTPTETVTSKIPNSNRTTKEFKLNPGAKIFSPSFPNKRPPTSPVIPAGANLAYVPDGYPAVQVAAPPPEVEIGPYAPRSLPVKFVPYGNVLSGNGGGDVQHPPPVLGYMANRAPPARYVGQYHPVQTTPTFVQPGSPNVMVGRFGPVVYVHPVSQDMVPSTTSFSQVNTCSILTPHQVHVPKHQGTAAAQALQLCGGPPYIATAGGGQTPFMLPGHIPISQPPYPMIRPMPVPGSNGFLVSKFS 474
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo4g02423 474 MobiDBLite consensus disorder prediction 139 251 - -
Tamo4g02423 474 MobiDBLite consensus disorder prediction 139 182 - -
Tamo4g02423 474 Pfam Ataxin 2 SM domain 26 105 IPR025852 -
Tamo4g02423 474 MobiDBLite consensus disorder prediction 197 251 - -
Tamo4g02423 474 PANTHER ATAXIN 2-RELATED 145 461 IPR045117 GO:0003723(InterPro)|GO:0003729(PANTHER)|GO:0010494(PANTHER)|GO:0034063(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo4g02423 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
5377566 Tamo Tamo4g02423 Tamo-Chr4:43291166 Tamo4g02431 Tamo-Chr4:43517799