AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo4g02542 ATGGCTAGCATAAAACTCGATGTCCTAGCAGAAGACCGATCTTTGCATAAATGGTGTGTTCCTTTGAGAGAAGACATTTTCTCTACATTTATGGGAAAAGGAAGTCCAATCGTGCATAAGGTTTTTGGTGATAAATCATTGTTTGGACCATTATTGTTTAAAAAGTTCTTTGATCCATCAGATGCGTTTCCTCTATGGGAATTTGAACCAATTGTGTTGTTGTCTAATCTTCAGAAGCCTTGTGTGGATTGGTTTCAAACAGACTCGTGTTATATTCTAAAATCTGAACTACCAAAATTAGAAAAAAACAGCTTTCGAATTTGTGTTGAGAATGGGAAGATTATGGAGATTAGTGGGCTATGGAAGCACAAAGGAGAATCAAGAACAGACTGGAGGAGTGGCGAATGGTGGGAACATGGGTTTGTACGGCGGATAGAGTTGCCAGAACACACAAATTGGAAGAAGATCGATGCGTTTATGATCATGAACAATGATACAATGTTGGACATTAGACTTCCAAAGACGCCATTGGAATGTGATCAAGGGGTGATGAAAGAATCTACATCCGGTACTCCTTGA 579 39.21 MASIKLDVLAEDRSLHKWCVPLREDIFSTFMGKGSPIVHKVFGDKSLFGPLLFKKFFDPSDAFPLWEFEPIVLLSNLQKPCVDWFQTDSCYILKSELPKLEKNSFRICVENGKIMEISGLWKHKGESRTDWRSGEWWEHGFVRRIELPEHTNWKKIDAFMIMNNDTMLDIRLPKTPLECDQGVMKESTSGTP 192
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo4g02542 192 Pfam Hsp20-alpha crystallin family 84 178 IPR002068 -
Tamo4g02542 192 PANTHER 21.7 KDA CLASS VI HEAT SHOCK PROTEIN 3 181 - -
Tamo4g02542 192 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 72 189 IPR002068 -
Tamo4g02542 192 Gene3D - 52 181 IPR008978 -
Tamo4g02542 192 SUPERFAMILY HSP20-like chaperones 56 176 IPR008978 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo4g02542 - -