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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo4g02565 ATGGGTTCAGAACAATTCTTCGGCTACAGAACCACCGATCAAACCTCATCGTACCCCCAAACTCCCTTCATCCCGACAAAACTCACCGAAACCCTAAAATTCGAATCGAGAAACTCCCCAAAATCCCCATTTTTAACACCTTTCGATTCAGACACTTTCACCACATTAAGCGACAACAACAGCCCTTCTTCCCTCGAAGATTGCACCTCTTTCAACAACCATAGCGGCCCCACCACTCTTCACATGAAAAATGCTCTTCACGATATAGAAACCACCTTAATGGCCCCAGATGATGACGTCACCATGCCCATGGGTCGACGCGGATCCAAACCCGGGTCGGATCTAAACCGCTTGCTTATCGCGTGTGCGAGTGCTTTAGCGGGAAACAAACTAGATGAGTTTGAGAAATTAGTTGAAAAGGCGAGGGCGTTTGTGTCAATTACTGGGGACCCGATTCAAAGACTCGGCGCGTATATAGTCGAAGGGTTGGTAGCGAGAAAGGAATGTTCCGGAAACAATATATACCGCGCTTTAAAATGTAAAGAACCCGAAGGTAAAGAGTTACTGTCGTACATGCATATTTTGTACGAAATTTGCCCGTATTTGAAATTCGGGTACATGGCTGCAAACGGCGCGATAGCTGAAGCGGTTAGAACCGAAGATCGAATCCATATAATCGACTTCCAAATAGCCCAAGGGACACAGTGGATAACCCTGTTACAAGCCCTGGCAGCCCGCCCAGGCGGGCCTCCATGTGTGCGTATCACCGGGATCGACGATCCCGTTTCCAGATACGCGCGTGGCGACAGTCTGGAACTAGTCGGAAAACGACTAGCAGCAGTATCTGAAAAGTTCAAAATCCCAGTCGAGTTTCATCCGATCCAAGTATACGCTCCATTCGTAACAAAAGAAATGTTAGACGTGAGGCCCGGAGAGGCACTCGCAGTAAATTTCGCGCTTCAACTGCACCACATGGCAGACGAGAGCGTTGACTTGTCAAACCCTAGAGACGAGCGGTTACGGATGGTGAAATCTTTGAACCCTAAAGTTGTTACGTTAGTCGAACAAGAATCGAATACGAATACTGCGGCGTTCTTTCCGAGGTTCTTGGAGGTTTTGGATTATTACACTGCGGTGTTTGAAAGTATGGATATAACGTTACCTAGAGACAAGAAACAGAGGATTAACGTTGAGCAGCATTGTTTGGCGAGAGATATTGTGAATGTAATCGCGTGTGAAGGGAAAGAGCGAGTTGAAAGACATGAGCTTTTTATGAAGTGGAGGTCGAGGTTTATGATGGCAGGGTTTACGCAGTGTCCGTTGAGTTCGTACGTGAATTCGGTTATAAAGAATCTTTTGAAGTGTTATTCGGAGAATTATATGTTGGTTGAGAAAGACGGAGCTATGTTGTTGGGTTGGAAAGAGAGAAATCTTATATCTGCGTCTGCTTGGCACTGA 1458 46.43 MGSEQFFGYRTTDQTSSYPQTPFIPTKLTETLKFESRNSPKSPFLTPFDSDTFTTLSDNNSPSSLEDCTSFNNHSGPTTLHMKNALHDIETTLMAPDDDVTMPMGRRGSKPGSDLNRLLIACASALAGNKLDEFEKLVEKARAFVSITGDPIQRLGAYIVEGLVARKECSGNNIYRALKCKEPEGKELLSYMHILYEICPYLKFGYMAANGAIAEAVRTEDRIHIIDFQIAQGTQWITLLQALAARPGGPPCVRITGIDDPVSRYARGDSLELVGKRLAAVSEKFKIPVEFHPIQVYAPFVTKEMLDVRPGEALAVNFALQLHHMADESVDLSNPRDERLRMVKSLNPKVVTLVEQESNTNTAAFFPRFLEVLDYYTAVFESMDITLPRDKKQRINVEQHCLARDIVNVIACEGKERVERHELFMKWRSRFMMAGFTQCPLSSYVNSVIKNLLKCYSENYMLVEKDGAMLLGWKERNLISASAWH 485
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo4g02565 485 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 97 484 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Tamo4g02565 485 MobiDBLite consensus disorder prediction 1 22 - -
Tamo4g02565 485 Pfam GRAS domain family 116 484 IPR005202 -
Tamo4g02565 485 ProSiteProfiles GRAS family profile. 106 485 IPR005202 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo4g02565 K27748 scarecrow-like transcription factor PAT
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
5363659 Tamo Tamo3g04968 Tamo-Chr3:105321463 Tamo4g02565 Tamo-Chr4:47677945
5365684 Tamo Tamo4g02565 Tamo-Chr4:47677945 Tamo5g00744 Tamo-Chr5:11078938
5381102 Tamo Tamo1g04434 Tamo-Chr1:106433593 Tamo4g02565 Tamo-Chr4:47677945
5383032 Tamo Tamo2g05690 Tamo-Chr2:110256584 Tamo4g02565 Tamo-Chr4:47677945
5385126 Tamo Tamo4g02309 Tamo-Chr4:39363259 Tamo4g02565 Tamo-Chr4:47677945
5385303 Tamo Tamo4g03051 Tamo-Chr4:58283598 Tamo4g02565 Tamo-Chr4:47677945
5389112 Tamo Tamo7g04252 Tamo-Chr7:86207921 Tamo4g02565 Tamo-Chr4:47677945
5389226 Tamo Tamo8g00193 Tamo-Chr8:3090128 Tamo4g02565 Tamo-Chr4:47677945
5395971 Tamo Tamo2g03795 Tamo-Chr2:84637930 Tamo4g02565 Tamo-Chr4:47677945
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tamo1g00139 . 22 653 GRAS Transcription Factor family AT1G63100 50.154 0.0 557.0
Tamo1g00575 . 129 400 GRAS Transcription Factor family AT4G00150 41.581 3.05e-51 182.0
Tamo1g00650 ACH 170 547 GRAS Transcription Factor family AT3G03450 28.173 4.39e-50 179.0
Tamo1g00651 . 167 547 GRAS Transcription Factor family AT3G03450 29.648 6.94e-55 188.0
Tamo1g00652 . 178 547 GRAS Transcription Factor family AT3G03450 28.084 2.23e-52 181.0
Tamo1g00653 . 172 547 GRAS Transcription Factor family AT3G03450 26.854 1.19e-51 179.0
Tamo1g00654 . 211 582 GRAS Transcription Factor family AT2G01570 25.888 6.06e-50 176.0
Tamo1g00655 . 170 546 GRAS Transcription Factor family AT3G03450 28.093 6.78e-54 188.0
Tamo1g00656 . 276 547 GRAS Transcription Factor family AT3G03450 34.296 4.53e-50 171.0
Tamo1g02245 . 192 303 GRAS Transcription Factor family AT5G52510 46.154 1.11e-06 45.8
Tamo1g03657 . 64 529 GRAS Transcription Factor family AT1G14920 47.699 2.94e-150 437.0
Tamo1g04085 ACH 17 510 GRAS Transcription Factor family AT3G13840 48.444 1.54e-153 446.0
Tamo1g04434 . 98 378 GRAS Transcription Factor family AT2G04890 66.192 2.60e-135 388.0
Tamo1g04557 . 150 507 GRAS Transcription Factor family AT1G66350 30.585 3.12e-59 203.0
Tamo1g04558 . 150 507 GRAS Transcription Factor family AT1G66350 29.787 2.74e-56 194.0
Tamo1g04559 . 178 546 GRAS Transcription Factor family AT3G03450 28.46 5.56e-53 187.0
Tamo1g05216 . 338 650 GRAS Transcription Factor family AT3G54220 56.646 1.06e-123 367.0
Tamo1g05507 ACH 86 338 GRAS Transcription Factor family AT1G07530 37.5 8.52e-34 129.0
Tamo1g05850 . 73 713 GRAS Transcription Factor family AT2G37650 51.057 0.0 639.0
Tamo1g05885 . 242 651 GRAS Transcription Factor family AT3G54220 80.676 0.0 660.0
Tamo2g03042 . 4 482 GRAS Transcription Factor family AT1G50420 64.092 0.0 603.0
Tamo2g03795 . 23 529 GRAS Transcription Factor family AT1G14920 65.385 0.0 665.0
Tamo2g04067 ACH 42 486 GRAS Transcription Factor family AT4G36710 50.435 1.30e-138 404.0
Tamo2g04173 ACH 136 531 GRAS Transcription Factor family AT4G37650 63.224 2.60e-178 505.0
Tamo2g05690 . 192 640 GRAS Transcription Factor family AT5G52510 48.387 1.94e-126 379.0
Tamo3g00018 . 177 469 GRAS Transcription Factor family AT3G03450 33.439 4.57e-44 160.0
Tamo3g00029 . 144 507 GRAS Transcription Factor family AT1G66350 43.117 5.97e-99 310.0
Tamo3g00359 . 24 478 GRAS Transcription Factor family AT1G50420 37.773 9.58e-102 309.0
Tamo3g00886 ACH 37 483 GRAS Transcription Factor family AT4G36710 48.026 1.01e-120 360.0
Tamo3g00980 . 114 202 GRAS Transcription Factor family AT3G03450 46.067 9.70e-15 67.0
Tamo3g02929 ACH 14 443 GRAS Transcription Factor family AT3G13840 44.766 5.17e-114 344.0
Tamo3g02960 . 192 300 GRAS Transcription Factor family AT5G52510 46.491 1.09e-06 45.1
Tamo3g03270 . 155 516 GRAS Transcription Factor family AT5G17490 36.269 9.78e-72 231.0
Tamo3g03732 . 1 525 GRAS Transcription Factor family AT4G17230 51.163 1.04e-180 517.0
Tamo3g03734 . 154 525 GRAS Transcription Factor family AT4G17230 59.249 3.55e-159 456.0
Tamo3g04968 . 59 582 GRAS Transcription Factor family AT2G01570 65.84 0.0 676.0
Tamo3g05076 . 2 405 GRAS Transcription Factor family AT5G41920 65.721 0.0 531.0
Tamo4g00656 ACH 20 766 GRAS Transcription Factor family AT1G07530 45.174 0.0 608.0
Tamo4g00657 ACH 372 766 GRAS Transcription Factor family AT1G07530 50.886 2.14e-152 447.0
Tamo4g00829 . 139 319 GRAS Transcription Factor family AT5G17490 30.159 1.47e-14 71.2
Tamo4g00981 . 143 506 GRAS Transcription Factor family AT1G66350 26.031 2.20e-18 84.7
Tamo4g00982 ACH 134 515 GRAS Transcription Factor family AT5G17490 23.775 4.32e-16 78.2
Tamo4g02128 . 141 506 GRAS Transcription Factor family AT1G66350 33.933 4.88e-60 201.0
Tamo4g02244 . 188 444 GRAS Transcription Factor family AT1G55580 55.769 7.44e-95 284.0
Tamo4g02309 . 65 490 GRAS Transcription Factor family AT5G48150 65.105 0.0 574.0
Tamo4g02565 . 19 489 GRAS Transcription Factor family AT5G48150 55.324 0.0 516.0
Tamo4g03051 . 34 490 GRAS Transcription Factor family AT5G48150 60.776 0.0 558.0
Tamo4g03252 . 192 303 GRAS Transcription Factor family AT5G52510 46.154 1.11e-06 45.8
Tamo5g00478 ACH 86 767 GRAS Transcription Factor family AT1G07530 46.299 0.0 563.0
Tamo5g00744 . 73 714 GRAS Transcription Factor family AT2G37650 54.103 0.0 662.0
Tamo5g01359 ACH 157 414 GRAS Transcription Factor family AT5G17490 24.627 3.03e-17 80.1
Tamo5g03444 . 352 530 GRAS Transcription Factor family AT1G14920 71.503 7.04e-99 294.0
Tamo6g01289 . 13 530 GRAS Transcription Factor family AT1G14920 55.331 0.0 585.0
Tamo6g01775 . 1 578 GRAS Transcription Factor family AT5G66770 56.706 0.0 566.0
Tamo6g01793 ACH 74 485 GRAS Transcription Factor family AT4G36710 50.236 5.94e-125 368.0
Tamo6g01952 ACH 1 530 GRAS Transcription Factor family AT4G37650 56.877 0.0 556.0
Tamo6g01978 . 27 409 GRAS Transcription Factor family AT3G49950 61.929 7.68e-179 501.0
Tamo6g03191 . 169 530 GRAS Transcription Factor family AT4G37650 53.333 1.48e-129 379.0
Tamo7g00233 . 87 555 GRAS Transcription Factor family AT4G00150 51.83 1.34e-159 467.0
Tamo7g04125 . 150 506 GRAS Transcription Factor family AT1G66350 35.185 2.63e-75 240.0
Tamo7g04252 . 40 490 GRAS Transcription Factor family AT5G48150 66.083 0.0 605.0
Tamo8g00193 . 18 593 GRAS Transcription Factor family AT1G21450 55.651 0.0 600.0
Tamo8g00277 . 177 545 GRAS Transcription Factor family AT3G03450 33.333 8.74e-53 184.0
Tamo8g00278 . 224 593 GRAS Transcription Factor family AT1G21450 32.487 2.41e-53 187.0
Tamo8g00645 . 192 303 GRAS Transcription Factor family AT5G52510 44.262 2.45e-06 44.7
Tamo8g01622 . 309 353 GRAS Transcription Factor family AT3G54220 84.444 1.12e-18 80.5
Tamo8g02812 . 37 479 GRAS Transcription Factor family AT1G50420 63.288 0.0 565.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Tamo GRAS 1.9e-128 CL0063 TF GRAS