AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo4g02602 ATGCAACCCCAGAAACCCCTACCGGAATCCGACTTACCGTCGCTCGCCGCCATCAAAGTCAAGTCTTCATCCCCTCGTTTCCGTTCCACAAACCCTTCCGCTACCGAAACCCCCACTGCCGGTGCACAGCGCAAGATAGGCATCGCCGTCGATCTAAGCGACGAAAGCGCCTTTGCTGTAAAGTGGGCAGTTCATCAGTATCTCCGCCCCGGTGACGCCGTGATCCTCATCCACGTCCGTCCAACTTCTGTTCTCTATGGCGCTGACTGGGGCTCTGTTGATCTCTCCATCGTCGACACTGACAATGAGGAATCAACGCAGAAGCTCGAAGACGATTTCGATACTTTCACCACTACGAAATCCGCTGCGCTAGCGCAGCCTCTGGTCGACGCGCACATACCGTTTAAGATCCATATCGTGAAAGATCATGACATGAAGGAGAGGCTTTGTTTGGAAGTCGAGAGGCTAGGGTTAAGTGCTGTTATCATGGGAAGCCGAGGATTCGGGGCAACGAAACGCGGAAGCGACGGCAGGCTAGGGAGTGTTAGTGATTACTGTGTCCGTCACTGCGTGTGCCCGGTGGTTGTTGTGAGATATCCCGATGAGAAAGATCCCGGTGCTTCTGTTGAACCGGTGGTTTCCGTTGCTACAGCCGATGATGAAGAAGATGATCCCGAATTCCATGATGCAACCGATGACCGAAAGTGA 708 53.67 MQPQKPLPESDLPSLAAIKVKSSSPRFRSTNPSATETPTAGAQRKIGIAVDLSDESAFAVKWAVHQYLRPGDAVILIHVRPTSVLYGADWGSVDLSIVDTDNEESTQKLEDDFDTFTTTKSAALAQPLVDAHIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGATKRGSDGRLGSVSDYCVRHCVCPVVVVRYPDEKDPGASVEPVVSVATADDEEDDPEFHDATDDRK 235
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo4g02602 235 CDD USP-Like 45 197 - -
Tamo4g02602 235 PRINTS Universal stress protein signature 43 61 IPR006015 -
Tamo4g02602 235 PRINTS Universal stress protein signature 176 198 IPR006015 -
Tamo4g02602 235 MobiDBLite consensus disorder prediction 1 41 - -
Tamo4g02602 235 Pfam Universal stress protein family 44 198 IPR006016 -
Tamo4g02602 235 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 44 203 - -
Tamo4g02602 235 MobiDBLite consensus disorder prediction 23 40 - -
Tamo4g02602 235 MobiDBLite consensus disorder prediction 202 235 - -
Tamo4g02602 235 PANTHER OS01G0783500 PROTEIN 8 234 IPR044162 -
Tamo4g02602 235 Gene3D HUPs 33 210 IPR014729 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo4g02602 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tamo Tamo-Chr3:1661801 Tamo4g02602 Tamo-Chr4:48580540 transposed
Tamo Tamo-Chr3:86366416 Tamo4g02602 Tamo-Chr4:48580540 transposed
Tamo Tamo-Chr4:48580540 Tamo7g00558 Tamo-Chr7:7374005 wgd