AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo4g02608 ATGTCAAAAATTGCATCTACCTGCAACCAAATCCACATTAATCTCAACAGAGCTCAACTCTCCTCTACCATGGCCGCCGTCACACTATCTCCGGCTACTCATCAGTGCTGTTCTAGCAAGAATAGAGTGTTCTCACCTACCAAACGACTAACGGCGAAATCGGCTAGATTGGAAACGGCGGTACACCAAAAGGGGATGAAGGTCACATGTCAGGCAGCAAGCATTGCCGCCGACGGTGTTTCTGATATGGAGAGAAGGAAGCTTATGAACTTGTTGCTGGTTGGCGCTATTGGTCTTCCCGTCGCCGGTATCTTGGCCCCTTATACCGCTCGACCTAGCTCATCTAGTTGGCAAGATGGAACCGCTACCACCGCCAGGGACGAATTCGGAAACAATATTATTGCATCAGAATGGCTAAACACCCACCCACCACATGACAGAACCCTAACTCACGGCTTAAAGGGAGATCCAACGTACATTATTGTCGAAAACAACACAACTATCGCAAAATACGCGATTAACGCGGTATGCACGCATTTAGGGTGTATAGTGCCATGGAACACAGTACAAAATAAGTTCATATGCACTTGCCATGGCTCCCAATATGATAACTATGGTAAAGTTATTAAAGGTCCTTCTACTAAGTCTTTGGAACTGGCCCATGTGGATATCGATAATGGTAATGTGGTATTTGTTCCATGGATAGAATCTGATTTATAG 720 45.69 MSKIASTCNQIHINLNRAQLSSTMAAVTLSPATHQCCSSKNRVFSPTKRLTAKSARLETAVHQKGMKVTCQAASIAADGVSDMERRKLMNLLLVGAIGLPVAGILAPYTARPSSSSWQDGTATTARDEFGNNIIASEWLNTHPPHDRTLTHGLKGDPTYIIVENNTTIAKYAINAVCTHLGCIVPWNTVQNKFICTCHGSQYDNYGKVIKGPSTKSLELAHVDIDNGNVVFVPWIESDL 239
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo4g02608 239 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 58 234 IPR014349 GO:0005886(PANTHER)|GO:0016491(PANTHER)|GO:0051537(InterPro)
Tamo4g02608 239 Gene3D Single helix bin 71 110 - -
Tamo4g02608 239 Gene3D - 112 239 IPR036922 GO:0051537(InterPro)
Tamo4g02608 239 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 138 231 IPR017941 GO:0051537(InterPro)
Tamo4g02608 239 SUPERFAMILY ISP domain 78 231 IPR036922 GO:0051537(InterPro)
Tamo4g02608 239 Pfam Rieske [2Fe-2S] domain 156 217 IPR017941 GO:0051537(InterPro)
Tamo4g02608 239 PRINTS Rieske 2Fe-2S subunit signature 205 217 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Tamo4g02608 239 PRINTS Rieske 2Fe-2S subunit signature 172 183 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Tamo4g02608 239 PRINTS Rieske 2Fe-2S subunit signature 193 205 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo4g02608 K02636 cytochrome b6-f complex iron-sulfur subunit [EC:7.1.1.6]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tamo Tamo-Chr2:20561963 Tamo4g02608 Tamo-Chr4:48663759 dispersed