AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo4g02611 ATGGCAAGCAAAATGAGTTTGTTTTACATCATTTTGGCAACCATTGTTGTCTCATGTGTGCTTTCACAAGTGAAAGCATATACATCGAGTTACTGTGGCCCTGCATCTCGTTGTCCGCATCAATATATTTCATGCCCTTCTGAATGCCCGGAAAGCAACTCATATGATCCCAAGGCTAAAGTTTGTCGCATTGATTGTTATTCCCCTAAATGCAAGGCCGAATGCAAGCATGACAATAAACCAGACTGTGACACACCGGGATCGGCATGTTACGACCCACGGTTCATTGGAGGAGACAGCATTGTGTTCTACTTTCACGGCAAGGTTGACCAGCATTTCAGCCTGGTCTCTGATTCTAACCTCCAAATCAACGGACGATTCATCGGCCACCAACCCACCGGCAGGTCCAGGCCCTTCACCTGGATCCAAGCCTTGGGTCTCCTCTTCAATTCCCACAGTTTCTCTCTAGAAGCGACTAAATCCGCCACCTGGGACGGCGGCGTCGACCATCTGAAACTCTCTTACAATGGTGAAGAAATTCCGTTAGCTCTCGGTGGGTTATCCTCATGGAAGTCACCAGAGGGTGAAATCGAAGTGGAGAGAACTTCCACCGTGAACAGCGTGATGGTGAACATCCCTGGAGTGGTGGAGATTTTGGCAAATGTGGTGCCAGTTACAGCGGAAGATGACAAGATCCATGGCTATAATGTGCCGTCTGATGACTGCTTTGCTCATTTGGAAGTTCAATTTAAGTTTAGTGGACTTTCCGACGGTGTGGAAGGAGTTTTGGGGAGGACATATCAACCGGATTATAAGAATCCAGCGAAGCCAGGGGTGGCTATGGCGGTTGTGGGAGGAGAAGACAAGTATAGGACCACATCTTTGTTGTCGTCTGATTGCGCAAATTGCATCTATGATTCGAGTAATGTTGGATTGGAGGAAGAGAAGAAGACGATTAAGGAGCATGGAACGTTGGATTGTTCGGCCAAGGGGTTGTTCCATGGAAATGGGATTGTTTGCAAGAAATGA 1029 47.52 MASKMSLFYIILATIVVSCVLSQVKAYTSSYCGPASRCPHQYISCPSECPESNSYDPKAKVCRIDCYSPKCKAECKHDNKPDCDTPGSACYDPRFIGGDSIVFYFHGKVDQHFSLVSDSNLQINGRFIGHQPTGRSRPFTWIQALGLLFNSHSFSLEATKSATWDGGVDHLKLSYNGEEIPLALGGLSSWKSPEGEIEVERTSTVNSVMVNIPGVVEILANVVPVTAEDDKIHGYNVPSDDCFAHLEVQFKFSGLSDGVEGVLGRTYQPDYKNPAKPGVAMAVVGGEDKYRTTSLLSSDCANCIYDSSNVGLEEEKKTIKEHGTLDCSAKGLFHGNGIVCKK 342
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo4g02611 342 Pfam Root cap 249 305 IPR009646 -
Tamo4g02611 342 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Tamo4g02611 342 PANTHER ROOT CAP DOMAIN-CONTAINING PROTEIN 29 342 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo4g02611 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tamo Tamo-Chr3:91228789 Tamo4g02611 Tamo-Chr4:48717115 dispersed
Tamo Tamo-Chr3:91249756 Tamo4g02611 Tamo-Chr4:48717115 dispersed
Tamo Tamo-Chr4:48717115 Tamo4g02614 Tamo-Chr4:48797723 dispersed
Tamo Tamo-Chr4:48717115 Tamo4g02612 Tamo-Chr4:48730555 tandem