AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo4g02617 ATGGGGTTGTCTCTCAAAGTCGCTGTCGTTTCCGCCACCGTATTATCAACCGCCGTTATGCTCAAGCTTCTTGCACCGGTTATTATGGAGTTGGCAATCTCCGACCTTCCGTCCATATGGACCTCCGTCGTATCCTGGCTTAAACCGCCGTATCTTTACGTCGTCATCAACTGTATCATCATCACCATCGTTGCTTCTTCGCGGTTACAGTCCTCCAAGCTCGATGATTCCATTTCTCCGGCGATGTCAGCTGTTCTACTCCCAACTGATCCCATAAAGGTCGAGGTCGGCGTCGTCCTCCCTGTTGAGCTACCTCCGGTTCGTGAACCGGAACCACCGTTCCACGGTGGCGAGTTTGCGAATGAGCCAGTGAAGATCGCCGCCGTTAGTTACATCAATAGTCCGATGTTTGTTCAAGCTCCGGAACCGGACTTTGGTGCTACTACTCGGTTTACTGATGAATATAGGGATGAAGAGATGAAGGTAGCCACGGAAGCTTACGAAGAAATCACAAAAAACAGAGTTAATAAGAATGTAATCTCGATGTCCTCATGGAACCCGTCAAAAATCGATCGAGTAGATGTCACTTTTCCGGTGGAAAAACCACCAGCTTCCGCCAGATTCAACCACCGGAAACCTGCAAAAGCCACTGCCGAAGGTGGACGGACGTTGGGAGTTGCGAAACCAAAGCGTCAGGACACGCTGGAAACCACGTGGAAGACAATAACAGAAGGCCGGTCGGTGCCGTTAACGAGACACCTCCGTAAATCCGACACGTGGGAAACGTCAGACAGTCACGGCCGCAACTCCGATGACTCACAGTCACCGATCGACGATCATAATCACTCCGAAAGGATGACGAAATCGGATACGTTTGACGTGAAACGCGGCGGAGGGAGCAGTAGGAAACCGCCTACTCCGGCGTCGAAGCTGAGCCGGTCAGGTGGGTCGGGGAGGCTGAGGAAGGATCCGTCGTTGGGACAGGAGGAGCTTAACCGGAAAGTGGAAGCATTTATTAAGAAATTCAACGAGGATATGAGATTACAGAGACAAGAATCGTTGAATCAGTACATGGAGATGATCAATCGTGGGGCTCATTGA 1101 51.04 MGLSLKVAVVSATVLSTAVMLKLLAPVIMELAISDLPSIWTSVVSWLKPPYLYVVINCIIITIVASSRLQSSKLDDSISPAMSAVLLPTDPIKVEVGVVLPVELPPVREPEPPFHGGEFANEPVKIAAVSYINSPMFVQAPEPDFGATTRFTDEYRDEEMKVATEAYEEITKNRVNKNVISMSSWNPSKIDRVDVTFPVEKPPASARFNHRKPAKATAEGGRTLGVAKPKRQDTLETTWKTITEGRSVPLTRHLRKSDTWETSDSHGRNSDDSQSPIDDHNHSERMTKSDTFDVKRGGGSSRKPPTPASKLSRSGGSGRLRKDPSLGQEELNRKVEAFIKKFNEDMRLQRQESLNQYMEMINRGAH 366
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo4g02617 366 MobiDBLite consensus disorder prediction 203 331 - -
Tamo4g02617 366 Pfam Cotton fibre expressed protein 328 363 IPR008480 -
Tamo4g02617 366 PANTHER COTTON FIBER (DUF761) 23 364 - -
Tamo4g02617 366 Pfam Domain of unknown function (DUF4408) 37 69 IPR025520 -
Tamo4g02617 366 MobiDBLite consensus disorder prediction 249 297 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo4g02617 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tamo Tamo-Chr4:48847189 Tamo8g03485 Tamo-Chr8:73811370 dispersed
Tamo Tamo-Chr3:91161477 Tamo4g02617 Tamo-Chr4:48847189 wgd
Tamo Tamo-Chr4:48847189 Tamo7g00583 Tamo-Chr7:7757683 wgd