AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo4g02631 ATGGAGGGCGTTGATGCGAATGATAAGTACGCGAAAGAGCTAGAAATCGGTGTTAGAGTTGTACAGCTCGCTTGTTGTCTATGCCAGAAGGTGCAAAAGGGTTCGATTGGTCCGACGCCTGATCAGATCTTCTCCAAAGATGACGATTCGCCTGTTACTGTCGCCGATTGGAGTGTACAAGCGATGATAAGCTGGATTCTATCAGAATCATTCGGTAAACAAAACGTCTCGATTGTAGCTGAAGAAGACACACAAACTTTATCCGATTCAAACAGCGCCCGTTTACTCTCCGCCGTCGTTTCAACCGTGAACGAAAGTCTCTCTATGGCACCCAAATTCGGCCTCAAAGCTCCAACCTCCCCTCTACAACCCACCCAAGTTCTCGACGCAATCAACAACTGCAACTCCACCGGTGGCCCAACCGGAAAACACTGGGTCCTCGACCCAGTCGACGGAACCCTAGGATTTGTTCGTGGTGACCAGTACGCAGTCGCTCTTGCCCTAATTGAAAACGGGCAGGTTGTGGTTGGGGTCCTTGGCTGCCCGAATTATTCGAGTAAGAAGAAGCTAGTGAACAATTCGAGTGTGTCTAAAGAAGGGTGTGTGATGTATGCGAGAAAAGGGAGCGGTGAAGCTTGGATGCAGCCGTTGGTGTGTGAGGGTGGTGGGCCGGCGTTGGTGTGGCCTAATTCGGGAAGTAGGATTAGGGTTTCGTGTATTGATGATCCTTCCATGGCTACGTTTTGTGAACCGGTTGAAAAGGCTAATTCTAATCATTCTTATAGTGCCGGAATTGCTTACAGTTTAGGACTAAGAAAGCAACCTTTACGCGTATACAGCATGGTGAAATACGCGGCAATTGCACGTGGAGATGCAGAAATATACATGAAATTTGCAAAATCCGGATACAAGGAAAAGATATGGGACCATGCTGCCGGGGTGGTGATTGTGGAGGAAGCTGGCGGCGTTGTGACGGATGCTGGTGGTCGGCCACTCGATTTCTCAAAAGGGGTGTATCTTGAAGGGCTTGATAGGGGGATTGTTACTTGTTCAGGGGTCAATTTGCATGACAAAATTATAGGGGCTGTTTATGCGAGTTGGGATTCTTCTCATTTATGA 1119 48.44 MEGVDANDKYAKELEIGVRVVQLACCLCQKVQKGSIGPTPDQIFSKDDDSPVTVADWSVQAMISWILSESFGKQNVSIVAEEDTQTLSDSNSARLLSAVVSTVNESLSMAPKFGLKAPTSPLQPTQVLDAINNCNSTGGPTGKHWVLDPVDGTLGFVRGDQYAVALALIENGQVVVGVLGCPNYSSKKKLVNNSSVSKEGCVMYARKGSGEAWMQPLVCEGGGPALVWPNSGSRIRVSCIDDPSMATFCEPVEKANSNHSYSAGIAYSLGLRKQPLRVYSMVKYAAIARGDAEIYMKFAKSGYKEKIWDHAAGVVIVEEAGGVVTDAGGRPLDFSKGVYLEGLDRGIVTCSGVNLHDKIIGAVYASWDSSHL 372
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo4g02631 372 SUPERFAMILY Carbohydrate phosphatase 10 365 - -
Tamo4g02631 372 ProSitePatterns Inositol monophosphatase family signature 1. 145 158 IPR020583 -
Tamo4g02631 372 Gene3D - 9 220 - -
Tamo4g02631 372 CDD PAP-phosphatase 13 365 - -
Tamo4g02631 372 FunFam PAP-specific phosphatase HAL2-like 236 369 - -
Tamo4g02631 372 Pfam Inositol monophosphatase family 49 342 IPR000760 -
Tamo4g02631 372 NCBIfam 3'(2'),5'-bisphosphate nucleotidase 10 370 IPR006239 GO:0006790(InterPro)|GO:0008441(InterPro)
Tamo4g02631 372 PANTHER PHOSPHATASE 6 368 IPR051090 GO:0000103(PANTHER)|GO:0008441(PANTHER)|GO:0042578(PANTHER)
Tamo4g02631 372 ProSitePatterns Inositol monophosphatase family signature 2. 308 322 IPR020550 GO:0046854(InterPro)
Tamo4g02631 372 Gene3D - 236 366 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo4g02631 K01082 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tamo Tamo-Chr3:31347668 Tamo4g02631 Tamo-Chr4:48990606 dispersed