AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo4g02679 ATGGCAGCTCGGTTATTAGCACATGAGGTTTCCGATCTTTGCCTCGGCAAGCCACCGCTAACCTTCCTCCCCATCTCCGCCACCATCGGCGACGCCCTTACCGCCCTCCAATCCTCCGAGGATACCCACATCAGTATCTGGACTTGCGACCACCACCACCACTCGACCGGAGTTGAACCCATCAACGACTGCCGATGTGTCGGGAAAATCTGCATGGTGGATATCATCTGTTATCTCTGTAAAGAAGAAAACATCGTCGTGTCGCCTTCTATTGCACTCAAGTCCCCGGTTTCCGTTTTGCTGTCACGTGTTCCCGGCGTCGTACGACACGTGGAACCGTACGCGAGTTTGATGGAAGTCATTGATTTAATTATCCAAGGTGCACAGAATCTTATAGTGCCGATAAAGAGTACTACTAAGAACTTCAAAAGAAAACAACTCCGGCAATACCCGTTAAACGCTCCGACGACACACGCCGGTGGCCGGGAGTTCTGTTGGCTGACACAAGAAGACGTGATCAGGTTTCTTCTTAGCTCAATCGGTTTATTCTCTCCGACCGCCGCGTATTCCATCGAGTCACTTGGTATCATCACGACGGAGATTCTCACAATCAATTACCACTCGCCGGCTTCGAAAGCAGTGGACGCGATTGCAACCTCTCTCGCCGACCAAACTTCCGTTGCTGTGATTGACGACGATGGTGTACTAATCGGCGAAATATCTTCTTTTACGCTCTCCTACTGTGACGAAATGGTTGCAGCTGCTATCACCACCCTTTCCGCCGGCGATCTTATGGCATACATCGACTGCGGAGGCCCGCCGGAGGATATAATCAGGGTGGTGGAAGAGAGGTTGAAAGAGAGAAATCTGAACGGAATGCTCGAGGAGTTTATTATGTACTCCTCCGGAATTCCATACTGTAGCAACAATTCGTTGTCCGACGAGGAATCGATGCCGTCGCCGACCACCACGATGTCCGGGAGGTACAATAGATCGAGAAGGTACGCCGCCAGGGTAATGAGGAGGGCGGAGGCTATCGTCTGCCACCCGCGAAGCTCGTTGGTGGCGGTGATGATTCAGGCGATCGCACACCGTGTCAGTTACGTGTGGGTTGTTGAAGAAGACGGTAGCGTTGTCGGGATAGTGAGGTTTTCCGGCATGTTGGAAGTTTTCCGGGAACATCTAGAGTGCATGATGAGCTAG 1203 51.95 MAARLLAHEVSDLCLGKPPLTFLPISATIGDALTALQSSEDTHISIWTCDHHHHSTGVEPINDCRCVGKICMVDIICYLCKEENIVVSPSIALKSPVSVLLSRVPGVVRHVEPYASLMEVIDLIIQGAQNLIVPIKSTTKNFKRKQLRQYPLNAPTTHAGGREFCWLTQEDVIRFLLSSIGLFSPTAAYSIESLGIITTEILTINYHSPASKAVDAIATSLADQTSVAVIDDDGVLIGEISSFTLSYCDEMVAAAITTLSAGDLMAYIDCGGPPEDIIRVVEERLKERNLNGMLEEFIMYSSGIPYCSNNSLSDEESMPSPTTTMSGRYNRSRRYAARVMRRAEAIVCHPRSSLVAVMIQAIAHRVSYVWVVEEDGSVVGIVRFSGMLEVFREHLECMMS 400
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo4g02679 400 SUPERFAMILY CBS-domain pair 187 395 IPR046342 -
Tamo4g02679 400 ProSiteProfiles CBS domain profile. 340 397 IPR000644 -
Tamo4g02679 400 Pfam CBS domain 338 390 IPR000644 -
Tamo4g02679 400 Gene3D - 196 388 IPR046342 -
Tamo4g02679 400 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 25 394 IPR050511 GO:0005634(PANTHER)|GO:0005737(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo4g02679 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tamo Tamo-Chr4:50322959 Tamo7g00620 Tamo-Chr7:8341378 dispersed
Tamo Tamo-Chr4:50322959 Tamo3g03947 Tamo-Chr3:92003111 transposed