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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo4g02683 ATGAGTTGCATGATCCCCAAGTCGACTTCTGCTGGATCTTCTCGCCCGGAATTTGTGATGTCGACCAAAGCATGGGTTTTGCACGGCGTCGCCGTCGCGGCTGCTCTCGTCGGCGCTCACGCATACTTCTATTACCGCCGATCTGCCACCATTTTTCGGAGTCGAGTTGTCGGCATAATTCCAGCTCGGTTCGCTTCTTCCCGATTTCAGGGCAAACCCCTCGCTGAGATCCTCGGCAAACCCATGATCCAGAGAACTTGGGAAAGAGCAAAGTTGGCAACGACATTGGATCGCGTTGTTGTGGCAACGGATGATGAAAAAATTGCAGAATGCTGTCGTGGATTCGGTGCTGATGTGATAATGACCGCCGAGTCTTGCAGAAACGGCGCCGAGAGGTGTAGTGAAGCACTTCAAAAACTCGACAAAAAGTACGACATTGTTGTCAATATTCAAGGAGATGAACCGCTAATTGACCCTGAAATAATCGATGGAATTGTTAAAGCCCTTCAGACGACCCCAGATGCAGTTTTCAGCACTGCGGTCACATCCTTGAAACCAGAAGATGCTTTTGATCCAAATCGTGTGAAATGTGTTGCTGATAATCGTGGTTATGCAATTTACTTTTCTCGAGGACTCATTCCTTTTAACAAGTTTGTAAACTGTTGA 666 47.75 MSCMIPKSTSAGSSRPEFVMSTKAWVLHGVAVAAALVGAHAYFYYRRSATIFRSRVVGIIPARFASSRFQGKPLAEILGKPMIQRTWERAKLATTLDRVVVATDDEKIAECCRGFGADVIMTAESCRNGAERCSEALQKLDKKYDIVVNIQGDEPLIDPEIIDGIVKALQTTPDAVFSTAVTSLKPEDAFDPNRVKCVADNRGYAIYFSRGLIPFNKFVNC 221
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo4g02683 221 NCBIfam 3-deoxy-manno-octulosonate cytidylyltransferase 58 217 IPR004528 GO:0008690(InterPro)
Tamo4g02683 221 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 46 220 IPR029044 -
Tamo4g02683 221 SUPERFAMILY Nucleotide-diphospho-sugar transferases 56 215 IPR029044 -
Tamo4g02683 221 PANTHER 3-DEOXY-MANNO-OCTULOSONATE CYTIDYLYLTRANSFERASE 13 217 - GO:0005829(PANTHER)|GO:0008690(PANTHER)
Tamo4g02683 221 CDD CMP-KDO-Synthetase 55 217 IPR004528 GO:0008690(InterPro)
Tamo4g02683 221 Pfam Cytidylyltransferase 57 217 IPR003329 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo4g02683 K00979 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tamo Tamo-Chr4:50345975 Tamo7g00635 Tamo-Chr7:8422275 dispersed