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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo4g02695 ATGCTAACCGGATCATCAAAACCAGATCCGCCGGCGCCGGCGAAGATATCCATTCCGCCGGTCAAAACCGGTCAACAGAAGAAACAAGGGTTCAAGCTTTATGAGCGGCGGAACAGCCTGAAAAACGGGCTGATGATCAACGCGGCGGTGCCGAAGTTCCACGGTGGTCACGGTCACGGGCTATCGCCGCGAGTCCACGAGATACTCTCTCCCAGCATTCTTGATTTTCCGGCGCTTGTGCTTAGTCCGGTGACACCATTAATCGAAGACCCGTTTAATAAATCGTCACCGTCGGTCGGGAACTCGTTGGAGGAAGAGAGGGTAATTGCGGCAAAAGGATTTTATTTTCATCCGTCGCCTAGGGCGGCGACGCCACATGCGACGACAGAGCCACAGCTGCTGCCGCTGTTTCCGTTGACCTCGCCGCGGGTATCGGAGTCGTCGATTTAG 450 55.56 MLTGSSKPDPPAPAKISIPPVKTGQQKKQGFKLYERRNSLKNGLMINAAVPKFHGGHGHGLSPRVHEILSPSILDFPALVLSPVTPLIEDPFNKSSPSVGNSLEEERVIAAKGFYFHPSPRAATPHATTEPQLLPLFPLTSPRVSESSI 149
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo4g02695 149 PANTHER VQ MOTIF-CONTAINING PROTEIN 11-LIKE 1 145 IPR039611 -
Tamo4g02695 149 MobiDBLite consensus disorder prediction 1 28 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo4g02695 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
166409 Tamo2g00964 Tamo4g02695
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tamo Tamo-Chr2:18217293 Tamo4g02695 Tamo-Chr4:50623011 dispersed
Tamo Tamo-Chr4:10338341 Tamo4g02695 Tamo-Chr4:50623011 dispersed
Tamo Tamo-Chr4:50623011 Tamo7g00646 Tamo-Chr7:8565672 dispersed
Tamo Tamo-Chr4:50623011 Tamo3g03967 Tamo-Chr3:92201003 transposed