AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo4g02728 ATGGGTCGGATTTTTTTGGTGGAGTTGGAGGGAAGAACTTACAAATGCAAGTTCTGCAAAACAAATCTAGCCCTTGCCGACAGTGTCATCTCCCGGGGTTTTCATTGCCGCAGAGGAAAAGCTTATCTGTTCAGTAACGTGGTGAACGTGACAGCTGGCGCTATCGAGGAACGGATGATGCTTTCAGGATTGCACACGGTTACAGATATATTTTGTGTATGTTGTGGACAAATTGTTGGATGGAAATACGAGACGGCACATGAACAATCACAAAAGTATAAAGAAGGAAAATTTGTTCTTGAAAGGGGAAGGATCATGGATGGACTTGATTCAGAGTTTTACATTGATACCCGTCCGAGTTCAAGTGATGCTGAAGAGGCATAA 384 43.23 MGRIFLVELEGRTYKCKFCKTNLALADSVISRGFHCRRGKAYLFSNVVNVTAGAIEERMMLSGLHTVTDIFCVCCGQIVGWKYETAHEQSQKYKEGKFVLERGRIMDGLDSEFYIDTRPSSSDAEEA 127
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo4g02728 127 ProSiteProfiles Yippee domain profile. 12 109 IPR034751 -
Tamo4g02728 127 PANTHER PROTEIN YIPPEE-LIKE CG15309-RELATED 1 106 IPR039058 -
Tamo4g02728 127 Pfam Yippee zinc-binding-DNA-binding -Mis18, centromere assembly 14 105 IPR004910 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo4g02728 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tamo Tamo-Chr4:51581988 Tamo5g04029 Tamo-Chr5:88558316 dispersed
Tamo Tamo-Chr4:51581988 Tamo2g05421 Tamo-Chr2:106659372 transposed