AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo4g02740 ATGAAAAGTAAGCCACCCGCTTTCGTCTTTACCTTTAAACCCTTCTTCCTTCTTCCCCAAATCCACAACCACCATTTTCATGTAAGACAACCATGGATTCCTCTTCTTTTACATCTGCTAGACCACCCTTTTCCCTCCTCTTTTCTCTCATGGCGAACTACCTACCTTCCTCTCTATAAATACCCTCATCTCCCACTCACTCACTCACTTACTCACTCTCTCGCTCCTCCTTTTAGCTTTCTGCAAATGGCTACTAACTCAGTTGAGATCGAGAACTCAGAAGAATCGAAAGTTCATGTTTTCTCATCATCAACAGAGTTACTCGAGAAGTTGCATCAGAAATGGAATTCCGTCGAGAAGCCTCCATATCCCGCCATGTATTCAAGTGTTTACGGCGGAATTATCCTCGATCCAGCGATGATGGTCATCCCAATCGACGATCATATGGTACATCGAGGTCACGGCGTATTCGACACCGCCATAATTCTCGACGGACACCTCTACGAACTAGACGCCCATCTCGATCGAATCCTCATTTCAGCATCAAAAGCCAAGATCTCATCACCATTCCCCAAATCAACCCTCCGCACCATTCTCATCCAACTAACCGCCGCATCAAACATCAAAAAAGGAACTGTCCGATACTGGTTAACTTCCGGCCCAGGTGATTTCCTTCTCACTCCTTCCAACTCCCAAGCCCCCGCATTCTACGCAGTCGTAATTGACGAAGAGTTCTCTCAATGCAAACACGGCGTTAAAGTAATCACCTCCACAATCCCCATGAAAGTCCCTCTATTTGCCACAAGCAAAAACGTAAACTACCTCCCAAACGTCCTCTCAAAACTCGAAGCAGAAGAGCAAGGGGCGTTTGCGTCGATTTGGGTAGATGATGAAGGGTATGTTGCAGAGGGTCCGAATGTGAATGTGGCGTTTGTGACACGTGGCAATGAGCTAATTTTGCCGTTTTTTGAAAAGATTTTGAGTGGCTGTACGGCTAAAAGACTTCTGGAATTGGCGCCGAAGTTAGTTGAAAATGGGAGGTTGAAAAGCGTGAAAACAGGGAATATTACGGTTGAAGATGCTAAAAATGCTGCTGAGATGATGTATGTTGGAAGCACGTTGCCTGTTTTGCCGATTATTGAGTGGGATGGAAAGCCTATTGGTGATGGGAAAGTTGGAGAATTGACGATGGCGTTATCGGATTTGGTTTGGGAGGATATGGTGGCGGGTCCTGAGACACATAGGTTGAAAGTTCCGTATGTGTAG 1266 45.89 MKSKPPAFVFTFKPFFLLPQIHNHHFHVRQPWIPLLLHLLDHPFPSSFLSWRTTYLPLYKYPHLPLTHSLTHSLAPPFSFLQMATNSVEIENSEESKVHVFSSSTELLEKLHQKWNSVEKPPYPAMYSSVYGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILDGHLYELDAHLDRILISASKAKISSPFPKSTLRTILIQLTAASNIKKGTVRYWLTSGPGDFLLTPSNSQAPAFYAVVIDEEFSQCKHGVKVITSTIPMKVPLFATSKNVNYLPNVLSKLEAEEQGAFASIWVDDEGYVAEGPNVNVAFVTRGNELILPFFEKILSGCTAKRLLELAPKLVENGRLKSVKTGNITVEDAKNAAEMMYVGSTLPVLPIIEWDGKPIGDGKVGELTMALSDLVWEDMVAGPETHRLKVPYV 421
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo4g02740 421 CDD ADCL-like 147 403 IPR017824 GO:0008696(InterPro)|GO:0030170(InterPro)|GO:0046656(InterPro)
Tamo4g02740 421 Gene3D - 243 411 IPR043132 -
Tamo4g02740 421 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 131 408 IPR036038 GO:0003824(InterPro)
Tamo4g02740 421 Pfam Amino-transferase class IV 155 382 IPR001544 GO:0003824(InterPro)
Tamo4g02740 421 PANTHER AMINO-ACID AMINOTRANSFERASE 110 411 IPR050571 GO:0019752(PANTHER)
Tamo4g02740 421 FunFam D-alanine aminotransferase 243 410 - -
Tamo4g02740 421 FunFam D-amino-acid transaminase, chloroplastic 103 241 - -
Tamo4g02740 421 Gene3D - 100 242 IPR043131 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo4g02740 K18482 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tamo Tamo-Chr2:59267173 Tamo4g02740 Tamo-Chr4:51797389 dispersed