AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tamo4g02767 | ATGGCTTCAGGGATATTAGATGCGGACAAGATAAGCAAAGGGAAAAGTAAGTGGGGAGAGGGTAATAAAGTTTACACAAGAAGATTCAAAAGAACCACCAGGAACACCACCACCACCGCCGACGCTGACGCCGACGCCCCGTCTTCCCCAACCACCACCGCCACCGCTACATCTCCGCCTACTACCAGAACCAACACCTCCAATCCAGCTTCTCCACCCACCACCACAACAAACAACGAGCAAACTCTAGCTACTGAAGACGCGAATTCGGAAAAGCAACATACTCTATCGCCGGTAGTCGAGCTATCAGATGATCATTCGGTTCAAATTGCGGCTTCCCCAAATCGACCCACCGTAAACGGCGTGATAAAACCGGTTGTTACTCTGGTGGACGATCGTGTTAAGATTAATTTAACAGCTGCGACGTCTAAGAACGAGATTATCGAGCTGCGAGAGAATCTATTAGCGGAGCTTAATCGAGTCCGACTTGCAACTCAAAAGCTTGAAGAGAAAGAAGCTGAGCTAACCACCACTTTCTCATCCGTTCTCGCTATTCCAGCCGACGTTGAAGCTTACAGTCATTCTCATTCACAGTATTCAGGTAATGATCTAATCGAGAGGAGAGCGTTGCTCAGAGTGAATTCAGAAATGGGTACCGATTTCATGGATAGAAGAGCCTTGATGCGACTAAATTCTGACATCGGTTCAGCTCCCACTACCGACATGAGACCTTTCAGACATCTAAACGTATCAGTCGTCGATAACAACAACAGCCATGGAGTCGGTGAATTCATTGAAAAAGAAAAACGAACACCAAAAGCAAATCAATACTACAGAAACTCCGATTTCCTTCTTGGAAAAGACAGATTACCGCCAGAAACCAACAAACGTCACAAATCCAACGGTGGAAGAAAACAAAATCACAGCAAGGAATCCGATTACTCATCTGGACATGACCGACACAGAAACCAGATGTTCAAAAACTGCAACAATCTCCTACAGAGGTTAATGAAGCACAAACACGGCTGGGTGTTCAACGAGCCTGTAAATGCAAAACTCCTCGGACTCCATGATTACCATGACATCATCAAACACCCGATGGATTTAGGCACAATCAAAAGCCGACTTGCTCAAAACTTCTACAAGTCTCCCATGGAGTTTGCCGAAGATGTCAGGTTGACTTTTTACAACGCCATGACCTACAATCCAAAAGGACAAGACGTACATGTCATGGCTCAACAACTACTAACCATTTTCGAAGAAAAGTGGACATCAATTGAGTCAGAATCAAATCCAGATTGGAGATACGGAACAATTTACGACACAAACTCCAACACTCCAACAAGCCGTACACCAACATCCAGAAAAGCTCCACATTTCGCACCTTCTAGAACACTATACAGGTCAGAATCAATGTTCATGACTAAACAAAAACCCAAAACTACCCCTGCGGCTAGAACACCAGTTCCCAAGAAACCAAAAGCTAAAGATCCGAATAAAAGGAACATGACGTATGAAGAGAAGCAAAAACTGAGCACGAATCTTCAAAGCTTGCCTTCTGAAAAGCTCGACAACATTGTCCAGATTATTAAAAAGAAGAACACGTCTCTTTCACAACATGATGATGAGATTGAAGTTGATATTGATAGTGTTGACGTGGAGACTTTATGGGAGCTTGATCGGTTTGTTACAAATTATAAAAAAAGTTTGAGTAAACATCGAAGAAGAGCTGAACTTGCTCAACAAGCTAATAATCGGACTTTGTTACAGAACCCTGTGGTATCAATGGAGGCTCCTAAAGTTAATAAAACAAGAGGTGAGAAGACGATTGTTGGTGGTGGAATTGGGGAAGGAGAGAGGAGAGGGGTGGATAATGGGAGTAGGTCAAGTAGTTCAAGCAGTTCTAGCAGTGATTCTGGATCTTCTTCAAGTGATTCAGATAGTGATAGTTCATCTGAAGATGGATCAGATGCAGGTCATTCGCCTAGAAGCTGA | 1995 | 43.71 | MASGILDADKISKGKSKWGEGNKVYTRRFKRTTRNTTTTADADADAPSSPTTTATATSPPTTRTNTSNPASPPTTTTNNEQTLATEDANSEKQHTLSPVVELSDDHSVQIAASPNRPTVNGVIKPVVTLVDDRVKINLTAATSKNEIIELRENLLAELNRVRLATQKLEEKEAELTTTFSSVLAIPADVEAYSHSHSQYSGNDLIERRALLRVNSEMGTDFMDRRALMRLNSDIGSAPTTDMRPFRHLNVSVVDNNNSHGVGEFIEKEKRTPKANQYYRNSDFLLGKDRLPPETNKRHKSNGGRKQNHSKESDYSSGHDRHRNQMFKNCNNLLQRLMKHKHGWVFNEPVNAKLLGLHDYHDIIKHPMDLGTIKSRLAQNFYKSPMEFAEDVRLTFYNAMTYNPKGQDVHVMAQQLLTIFEEKWTSIESESNPDWRYGTIYDTNSNTPTSRTPTSRKAPHFAPSRTLYRSESMFMTKQKPKTTPAARTPVPKKPKAKDPNKRNMTYEEKQKLSTNLQSLPSEKLDNIVQIIKKKNTSLSQHDDEIEVDIDSVDVETLWELDRFVTNYKKSLSKHRRRAELAQQANNRTLLQNPVVSMEAPKVNKTRGEKTIVGGGIGEGERRGVDNGSRSSSSSSSSSDSGSSSSDSDSDSSSEDGSDAGHSPRS | 664 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tamo4g02767 | 664 | CDD | Bromo-plant1 | 325 | 423 | IPR037377 | - | |
| Tamo4g02767 | 664 | MobiDBLite | consensus disorder prediction | 276 | 322 | - | - | |
| Tamo4g02767 | 664 | MobiDBLite | consensus disorder prediction | 437 | 458 | - | - | |
| Tamo4g02767 | 664 | MobiDBLite | consensus disorder prediction | 437 | 459 | - | - | |
| Tamo4g02767 | 664 | ProSiteProfiles | Bromodomain profile. | 337 | 409 | IPR001487 | GO:0005515(InterPro) | |
| Tamo4g02767 | 664 | SUPERFAMILY | Bromodomain | 309 | 433 | IPR036427 | GO:0005515(InterPro) | |
| Tamo4g02767 | 664 | MobiDBLite | consensus disorder prediction | 1 | 95 | - | - | |
| Tamo4g02767 | 664 | Pfam | Bromodomain extra-terminal - transcription regulation | 503 | 564 | IPR027353 | - | |
| Tamo4g02767 | 664 | PANTHER | OSJNBA0053K19.4 PROTEIN | 33 | 656 | - | - | |
| Tamo4g02767 | 664 | MobiDBLite | consensus disorder prediction | 474 | 502 | - | - | |
| Tamo4g02767 | 664 | Gene3D | - | 496 | 576 | IPR038336 | - | |
| Tamo4g02767 | 664 | MobiDBLite | consensus disorder prediction | 289 | 322 | - | - | |
| Tamo4g02767 | 664 | PRINTS | Bromodomain signature | 340 | 353 | IPR001487 | GO:0005515(InterPro) | |
| Tamo4g02767 | 664 | PRINTS | Bromodomain signature | 372 | 390 | IPR001487 | GO:0005515(InterPro) | |
| Tamo4g02767 | 664 | PRINTS | Bromodomain signature | 356 | 372 | IPR001487 | GO:0005515(InterPro) | |
| Tamo4g02767 | 664 | PRINTS | Bromodomain signature | 390 | 409 | IPR001487 | GO:0005515(InterPro) | |
| Tamo4g02767 | 664 | MobiDBLite | consensus disorder prediction | 596 | 664 | - | - | |
| Tamo4g02767 | 664 | MobiDBLite | consensus disorder prediction | 625 | 649 | - | - | |
| Tamo4g02767 | 664 | MobiDBLite | consensus disorder prediction | 31 | 95 | - | - | |
| Tamo4g02767 | 664 | Pfam | Bromodomain | 329 | 414 | IPR001487 | GO:0005515(InterPro) | |
| Tamo4g02767 | 664 | ProSiteProfiles | NET domain profile. | 493 | 574 | IPR027353 | - | |
| Tamo4g02767 | 664 | SMART | bromo-6 | 318 | 428 | IPR001487 | GO:0005515(InterPro) | |
| Tamo4g02767 | 664 | Coils | Coil | 151 | 174 | - | - | |
| Tamo4g02767 | 664 | MobiDBLite | consensus disorder prediction | 10 | 27 | - | - | |
| Tamo4g02767 | 664 | Gene3D | - | 287 | 433 | IPR036427 | GO:0005515(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tamo4g02767 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 166403 | Tamo2g00910 | Tamo4g02767 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Tamo | Tamo-Chr2:6303869 | Tamo4g02767 | Tamo-Chr4:52354782 | dispersed | |
| Tamo | Tamo-Chr4:52354782 | Tamo4g03675 | Tamo-Chr4:70791398 | dispersed | |
| Tamo | Tamo-Chr2:17084633 | Tamo4g02767 | Tamo-Chr4:52354782 | transposed | |
| Tamo | Tamo-Chr3:949055 | Tamo4g02767 | Tamo-Chr4:52354782 | transposed | |
| Tamo | Tamo-Chr7:11835037 | Tamo4g02767 | Tamo-Chr4:52354782 | transposed | |
| Tamo | Tamo-Chr4:52354782 | Tamo6g01896 | Tamo-Chr6:26153890 | wgd |