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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo4g02776 ATGGCGACTTGCGTTCTCCTTCGCACCCTTCTCTCCTCCGCTAATCAATCCCTAATCCCTCGCTGCTTCACTACCTCTGCTTATATTCAACGTTTACGCCCTATTGCCGCCATCGCCGCCTCTAATATCCGCCAGTCCTCACTTGCAGCTACCAATGCCCGTACCTTCTCAACTCGCCAGACCACGTCCTCTCCGAATGATTTGAACCCTAATGATTCAGATTGTCCCCCGAAGGAGTCGATTCTTCTGGAAGGTTGTGATTTTAAGCACTGGCTTGTCGTGACGAAGAAACCCGAAGGCGAGCCGACGAGAGATGAGATAATCGAGTCGTATGTCGATACCCTAGCTCAGGCTGTTGGTAGCTACGATGAAGCAAAAATGAAGATCTATTCAGTCTCAACAAGATTCTACTATGCTTTTGGAGCCCTTGTGTCCGAAGAAGTTATTGACAAGCTCCACGAGTTACCTAATGGTCGTTTTGTGCTTCCTGATTCTTACTTGGATGTTGAGAACAAAGACTATGGAGGCGAGCCATTTATTAATGGGAAGGCAGTTCCATATGATCTAAAGTACCATGAAGAGTGGATTAAAAACAATGCTCCCAAAATGGGTTTCGATCTTACTTACTTTTTTACCGCCGAATGA 645 46.36 MATCVLLRTLLSSANQSLIPRCFTTSAYIQRLRPIAAIAASNIRQSSLAATNARTFSTRQTTSSPNDLNPNDSDCPPKESILLEGCDFKHWLVVTKKPEGEPTRDEIIESYVDTLAQAVGSYDEAKMKIYSVSTRFYYAFGALVSEEVIDKLHELPNGRFVLPDSYLDVENKDYGGEPFINGKAVPYDLKYHEEWIKNNAPKMGFDLTYFFTAE 214
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo4g02776 214 Pfam Multiple organellar RNA editing factor 1, MORF domain 88 179 IPR054059 -
Tamo4g02776 214 MobiDBLite consensus disorder prediction 54 73 - -
Tamo4g02776 214 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 13 202 IPR039206 GO:0005739(PANTHER)|GO:0016554(InterPro)|GO:0080156(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo4g02776 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
166015 Tamo1g04334 Tamo4g02776
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tamo Tamo-Chr4:52359281 Tamo4g02776 Tamo-Chr4:52465025 proximal
Tamo Tamo-Chr1:113094869 Tamo4g02776 Tamo-Chr4:52465025 transposed
Tamo Tamo-Chr3:76119799 Tamo4g02776 Tamo-Chr4:52465025 transposed
Tamo Tamo-Chr3:90668681 Tamo4g02776 Tamo-Chr4:52465025 transposed
Tamo Tamo-Chr5:13470354 Tamo4g02776 Tamo-Chr4:52465025 transposed
Tamo Tamo-Chr7:61839601 Tamo4g02776 Tamo-Chr4:52465025 transposed
Tamo Tamo-Chr1:104323991 Tamo4g02776 Tamo-Chr4:52465025 wgd