AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo4g02841 ATGGCCGATATCGAAACCCTAGGTATTCTAGATGAGATTCAAGCACTCGTCTCCGATAAGCTTCAAGTGGTTTCTTACAAGTGGTTGAGTCGGAACTTTTTGGTGCCATCAAATACTGCCAAGAGACTCCTTGATGATTTTGTGAAAAAGAACGAATCTCAACTGGAGGTTATATATTCTTTATCCGGATGGTTGAAGAATAATCCTTCAGCTTACCATATAAAGCTTGTTACGACCTCCAAACTTCCAGAAGCCAAAGAAGAATTTGGTGACGATTGTTCAGTTCAAGTTTACAGTGTTCAAGCATGTGTCCCTAAAGATCCATCAGTGATTTGGAATACTGAATTTATACAAACAGAAGAGCTCTTTAAAGAACCCCCTAATGTCATCAATTGCTTACGTGACAACAGGTTTTGTGGGGTTTCAAATTCATATGTGAAACGAAATACTGAAGGAACACCTGTAATCAAGACACCTTCATTCCAAGAAAAAAAAGCTGAACAGTCAAACCCTAAACCAGAAAAGGTCAAAGATGTTTCAAATGCAAGTCATAGAGCACAAGTTTCTGAACAAAAGGAGGTCAAACCAGTTCCACATAAAGAGAAACTTCCTCAAATTCCAAACAAAAAGAAACCTCAAAATGATAAAACCTCTTCAATTAATTCAGGTTCATTAGCCAGTATGTGGGGCCGTGCATCTTCAAAACCAAAACCCGACCCCATTCCTGTTTCTAATGCAGATGCACAGGTTATTGCTGATGAGATGATGGAAAATGTAAGCAGTGATGATGAAGATGAACAAATGAACTTCAAAAGAGGCTCTAATGGTGAAGGGAATAACAGAAAAAGGAGAGTTGTTTTTGACAACTCTGATGATGATGATGAAGAAAAAGATATGGTGGTGAGCTTATCTTCACCAGATCCTCCAAAAAAACAAGTTTCTGTTGATTTAAAGAAAAGTGGAAAAACAAATTCGGGTCTTGAAAATAAGAACTTGGATTTTAATGAAAAAAAAGAAGAGAAAGTGAAGGTTTCTGATGTTGATTCTAAAAGTATATTGAAAGAAGAAAGAAATGATAATCCTATTTTAAATGAGAATCAATGTCCTAAAAAAGATGACGTGGAAGTAGTACAGAAAGATAAAGGGAGTGATGCTACTAAAAATGGTGTTAAAAAGAGGAAAGTTTTGAAGACTAGAATCGATGAACGTGGACGAGAAGTAACCGAAGTCGTTTGGGAGGATGAAGAGAAAGAGACAAAGCCTGATGACAATACAAGAAAAGATAAAGCCGATAATAATACCACCAACAAGCCTCTTGCATCAGCTCCTAAAAAGTCACCAGCAGTCGGAAATCCAGCTGGCAAAACAGGAAACAAGAAAGCTGTTTCAAAGGATCCTAAACAGGGGAACATCATGTCTTTCTTCAAGAAGAAATAA 1437 37.16 MADIETLGILDEIQALVSDKLQVVSYKWLSRNFLVPSNTAKRLLDDFVKKNESQLEVIYSLSGWLKNNPSAYHIKLVTTSKLPEAKEEFGDDCSVQVYSVQACVPKDPSVIWNTEFIQTEELFKEPPNVINCLRDNRFCGVSNSYVKRNTEGTPVIKTPSFQEKKAEQSNPKPEKVKDVSNASHRAQVSEQKEVKPVPHKEKLPQIPNKKKPQNDKTSSINSGSLASMWGRASSKPKPDPIPVSNADAQVIADEMMENVSSDDEDEQMNFKRGSNGEGNNRKRRVVFDNSDDDDEEKDMVVSLSSPDPPKKQVSVDLKKSGKTNSGLENKNLDFNEKKEEKVKVSDVDSKSILKEERNDNPILNENQCPKKDDVEVVQKDKGSDATKNGVKKRKVLKTRIDERGREVTEVVWEDEEKETKPDDNTRKDKADNNTTNKPLASAPKKSPAVGNPAGKTGNKKAVSKDPKQGNIMSFFKKK 478
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo4g02841 478 MobiDBLite consensus disorder prediction 151 166 - -
Tamo4g02841 478 MobiDBLite consensus disorder prediction 331 433 - -
Tamo4g02841 478 Gene3D DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 7 148 IPR041913 -
Tamo4g02841 478 MobiDBLite consensus disorder prediction 264 290 - -
Tamo4g02841 478 MobiDBLite consensus disorder prediction 167 181 - -
Tamo4g02841 478 MobiDBLite consensus disorder prediction 188 209 - -
Tamo4g02841 478 MobiDBLite consensus disorder prediction 151 478 - -
Tamo4g02841 478 PANTHER DNA POLYMERASE DELTA SUBUNIT 3 1 478 IPR019038 GO:0003887(PANTHER)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006271(PANTHER)|GO:0006297(PANTHER)|GO:0043625(InterPro)|GO:0043625(PANTHER)|GO:1904161(PANTHER)
Tamo4g02841 478 FunFam DNA polymerase delta subunit 7 149 - -
Tamo4g02841 478 Pfam DNA polymerase subunit Cdc27 23 478 IPR019038 GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0043625(InterPro)
Tamo4g02841 478 MobiDBLite consensus disorder prediction 210 229 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo4g02841 K03504 DNA polymerase delta subunit 3
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tamo Tamo-Chr4:53890844 Tamo8g02235 Tamo-Chr8:31687118 dispersed