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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo4g02843 ATGACGTCGGGTACGAGGATGCCGACGTGGAAGGAGAGGGAGAACAACAAGAGGAGAGAGAGAAGGAGGAGAGCGGTTGCCTCTAAGATATTCACCGGACTGAGAATGTTCGGGAATTACAAGCTGCCTAAGCATTGTGATAACAATGAAGTCCTTAAAGCCCTCGCCGATGAGGCTGGTTGGACCGTCGAACCGGACGGCACCACCTATCGTAAGGGATGTAAGCCATTAGATCGAATGGACATAGGTGGATCAACATCAGCAAGCCCATGTTCATCATACCAACCAAGCCCCTACGCTTCATATCACCCAAGCCCACCTTCCTCTTCAATCGCAAGCCCATCTTCATCATCCCCCCACCCTGATTCACTCATCCCATGGCTCAAGAATCTCTCATCCAATCCAAACCCACCCCATCATAATTACATCCACACTGGATCCATTAGTGCCCCCGTGACCCCACCCACGGCCTCCCCAACTGCCCGAATCAAAACGGACATCACGTGGGGGATTTCCCCCACGTCCCCGACTTTTAGTCTTGTAGATTCGAACCCGTTTGGGTTTAAGGTCGCGGGTGGGTCAGGGGTGTGGATGGGTGGACAGAGTGGGGAGTGTTCGCCTTTGGGGTTTGAGAGTGGTTGTGATGTGGCGATGGGGGAGTTGGTTTGTGATGAGTTTGCGTTTGGAAGTAGTGTGGGAGGGAGAGTTAAGCCGTGGGAAGGAGAGAGGATTCATGAGGTGTGTGTGTCTGATGATCTTGAACTTACTCTTGGGTCTTCAAAAACCAGGTAA 792 52.15 MTSGTRMPTWKERENNKRRERRRRAVASKIFTGLRMFGNYKLPKHCDNNEVLKALADEAGWTVEPDGTTYRKGCKPLDRMDIGGSTSASPCSSYQPSPYASYHPSPPSSSIASPSSSSPHPDSLIPWLKNLSSNPNPPHHNYIHTGSISAPVTPPTASPTARIKTDITWGISPTSPTFSLVDSNPFGFKVAGGSGVWMGGQSGECSPLGFESGCDVAMGELVCDEFAFGSSVGGRVKPWEGERIHEVCVSDDLELTLGSSKTR 263
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo4g02843 263 PANTHER BES1-BZR1 HOMOLOG PROTEIN 3-RELATED 172 263 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
Tamo4g02843 263 Pfam BES1-BZR1 plant transcription factor, N-terminal 4 118 IPR008540 -
Tamo4g02843 263 MobiDBLite consensus disorder prediction 1 26 - -
Tamo4g02843 263 MobiDBLite consensus disorder prediction 85 119 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo4g02843 K14503 brassinosteroid resistant 1/2
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Event-related genes

Select Gene_1 Gene_2 Event_name
166398 Tamo2g00858 Tamo4g02843
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tamo Tamo-Chr3:93741361 Tamo4g02843 Tamo-Chr4:53929057 dispersed
Tamo Tamo-Chr4:19992018 Tamo4g02843 Tamo-Chr4:53929057 dispersed
Tamo Tamo-Chr4:53929057 Tamo7g00779 Tamo-Chr7:10958898 dispersed
Tamo Tamo-Chr2:15924282 Tamo4g02843 Tamo-Chr4:53929057 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tamo2g00858 ACH 3 325 BZR Transcription Factor family AT1G78700 62.27 1.62e-102 301.0
Tamo2g04077 . 23 334 BZR Transcription Factor family AT1G75080 61.981 6.57e-108 315.0
Tamo3g02285 ACH 22 335 BZR Transcription Factor family AT1G75080 63.75 5.74e-104 306.0
Tamo3g02508 . 50 93 BZR Transcription Factor family AT1G78700 56.818 2.45e-09 53.1
Tamo3g04087 ACH 1 284 BZR Transcription Factor family AT4G18890 60.269 3.42e-84 252.0
Tamo4g01431 . 42 88 BZR Transcription Factor family AT1G19350 61.702 6.19e-14 65.9
Tamo4g02843 ACH 1 325 BZR Transcription Factor family AT1G78700 58.154 1.14e-87 262.0
Tamo5g04121 . 50 93 BZR Transcription Factor family AT1G78700 56.818 2.45e-09 53.1
Tamo7g00779 ACH 1 325 BZR Transcription Factor family AT1G78700 64.776 1.02e-109 320.0
Tamo7g03811 ACH 22 334 BZR Transcription Factor family AT1G75080 55.763 9.94e-86 261.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Tamo BES1_N 4.9e-59 No_clan TF BES1