AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo4g02899 ATGACATTCCCTGAGTTCTTTGAAGAGGACGGGAAGGTAAACCCTGCTTTTGACGCTTATCGCGATTGTAACCATCGGCCTCCAGCAACTGTAGACCTCAACTACGATGGCAATGATATCTCGGTACTTTCTTGTGGTCAACAGATAAGCACCAATATGATTGTAATGTATAGGCAGATGGTTACCAACGCCGGCAACCCATTAAGCTTCTTTGGCGGCAAATATAGTGTTGGGGACGATGCCATAGCTAATGGTGACCCATCTGTTGGGTCAATAGAGGTTGGGTGTCATACGGCAGTGCACAGGTGGGTGGGTAACCCAAGAATGCCGAACAATGAGGACATGGGGAACTTCTACTCTGCGGGGTATGATCCTGTGTTTTACGTCCACCATACGAATGTAGACCGTATGTGGAAACTATGGAAGGAGATGGGTATCAAAGGACACATTGAACCTCCAGAGCCTGATTGGCTTAACGCATCGTACGTATTCTACAATGAAAACGAAGAGCTTGTACGTGTATACAACAAAGACTGTGTACGCTTGGAAAAACTAAAATACGACTATGAAGTCGTCCCAATCCCATGGAAATACAGCCGACCCATTGCACGTACAAAGAAATCAAACATCGCGTTGTTATCTGTTGAAACCGTGAAAGAAGCTCAAGATTCCAAGTTTCCATTGAAGTTAGACAAGATAAGGAAGGTTTTGGTGAAGAGGCCAATCATAAATCGAAGCCAAGAGGACAAGGAGAATGCAAATGAGGTGTTGTTGATTAAGGAAATCATCTTTGGAGATGAGAGTGAGTTCGCAGGTAGTTTCGGACAGTTGCTACATAACCATAACCCTAATGAAGATATGTTGATCAGGAGTGCTATAAGGTTCGGATTAACGGAGCTTTTGGAGGACATTGGCGCAACGAATGATGAGTTTATATTGGTGACATTGGCGCCAAAGGTTGGGTGCGAGGAGGTGACCATTGGCGAGATCAAGGTCGAGTTAGTTCCAATAACTGGCTGA 1020 44.9 MTFPEFFEEDGKVNPAFDAYRDCNHRPPATVDLNYDGNDISVLSCGQQISTNMIVMYRQMVTNAGNPLSFFGGKYSVGDDAIANGDPSVGSIEVGCHTAVHRWVGNPRMPNNEDMGNFYSAGYDPVFYVHHTNVDRMWKLWKEMGIKGHIEPPEPDWLNASYVFYNENEELVRVYNKDCVRLEKLKYDYEVVPIPWKYSRPIARTKKSNIALLSVETVKEAQDSKFPLKLDKIRKVLVKRPIINRSQEDKENANEVLLIKEIIFGDESEFAGSFGQLLHNHNPNEDMLIRSAIRFGLTELLEDIGATNDEFILVTLAPKVGCEEVTIGEIKVELVPITG 339
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo4g02899 339 PRINTS Tyrosinase copper-binding domain signature 96 107 IPR002227 GO:0016491(InterPro)
Tamo4g02899 339 PRINTS Tyrosinase copper-binding domain signature 123 141 IPR002227 GO:0016491(InterPro)
Tamo4g02899 339 PANTHER TYROSINASE FAMILY MEMBER 3 302 IPR050316 -
Tamo4g02899 339 Pfam Protein of unknown function (DUF-B2219) 266 334 IPR022740 GO:0004097(InterPro)
Tamo4g02899 339 ProSitePatterns Tyrosinase and hemocyanins CuB-binding region signature. 124 135 IPR002227 GO:0016491(InterPro)
Tamo4g02899 339 Gene3D - 1 192 IPR008922 -
Tamo4g02899 339 Pfam Polyphenol oxidase middle domain 154 201 IPR022739 GO:0004097(InterPro)
Tamo4g02899 339 SUPERFAMILY Di-copper centre-containing domain 14 196 IPR008922 -
Tamo4g02899 339 Pfam Common central domain of tyrosinase 83 143 IPR002227 GO:0016491(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo4g02899 K00422 polyphenol oxidase [EC:1.10.3.1]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tamo Tamo-Chr2:15839795 Tamo4g02899 Tamo-Chr4:55160551 dispersed
Tamo Tamo-Chr4:54931406 Tamo4g02899 Tamo-Chr4:55160551 dispersed
Tamo Tamo-Chr4:55160551 Tamo5g01297 Tamo-Chr5:17984071 dispersed
Tamo Tamo-Chr4:57608159 Tamo4g02899 Tamo-Chr4:55160551 transposed
Tamo Tamo-Chr1:106815811 Tamo4g02899 Tamo-Chr4:55160551 wgd