AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo4g02903 ATGGCAATCATAGAAATGCGAGTGCATGTAGATTGTCCAGGATGCGAGAACAAGATCCGAAAAGCTCTTCAAAGACTCAAAGGTGTGGAGAACGTAGACATAGACATGGGGTTACAGAAAGTGACGGTGACTGGATACGCCGACGAGAAGAAGGTGTTGAAGACCGTCAGAAAAACTGGCCGCCGAGCTGAGATCTGGAACGTACCTTACAACCCTGATATCCGTAGCCATAACTACAACGTTAATCAATATGCTCAACAGCAACCACAAAACGGTGGTTCTACCGCCCCTGGCACAGCTGGCCCAGGCCCATCGGCGACGTTCTACACCCGGCAGCCATCATCGGCGTCCTCGTACAATTACTATAAACACGGTTATGATAACTACCAGGGTTTTAACCCGATCCAGTCATCGGGGTTGATTGGACACCAGACTGGTGCTGCCTTTAGCGATGAAAATACGAATGCTGCCTGTAATATCATGTAG 486 48.97 MAIIEMRVHVDCPGCENKIRKALQRLKGVENVDIDMGLQKVTVTGYADEKKVLKTVRKTGRRAEIWNVPYNPDIRSHNYNVNQYAQQQPQNGGSTAPGTAGPGPSATFYTRQPSSASSYNYYKHGYDNYQGFNPIQSSGLIGHQTGAAFSDENTNAACNIM 161
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo4g02903 161 SUPERFAMILY HMA, heavy metal-associated domain 3 67 IPR036163 GO:0046872(InterPro)
Tamo4g02903 161 CDD HMA 5 64 IPR006121 GO:0046872(InterPro)
Tamo4g02903 161 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 3 161 IPR045181 GO:0046872(InterPro)
Tamo4g02903 161 Pfam Heavy-metal-associated domain 7 61 IPR006121 GO:0046872(InterPro)
Tamo4g02903 161 Gene3D - 2 65 - -
Tamo4g02903 161 MobiDBLite consensus disorder prediction 87 110 - -
Tamo4g02903 161 ProSiteProfiles Heavy-metal-associated domain profile. 1 64 IPR006121 GO:0046872(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo4g02903 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tamo Tamo-Chr3:93149723 Tamo4g02903 Tamo-Chr4:55307028 dispersed
Tamo Tamo-Chr4:55307028 Tamo6g00285 Tamo-Chr6:3822516 dispersed
Tamo Tamo-Chr4:55307028 Tamo2g01940 Tamo-Chr2:51497469 transposed
Tamo Tamo-Chr4:55307028 Tamo3g01084 Tamo-Chr3:21511448 transposed