AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo4g02904 ATGGGGAATAAGTTGGGTAGGAGGAGGCAGGTCGTGGATGAGAAGTATACGAGACCTCAAGGGCTGTATCAACACAAGGATGTGGATCACAAGAAGCTTCGTAAGCTTATACTTGATTCCAAGCTCGCTCCTTGCTACCCCGGAGACGACGACTGCAGCTGTGATCTTGAAGAATGCCCAATTTGCTTCCTGTATTATCCAAGTCTAAATAGATCGCGATGTTGCACGAAAGGCATCTGTACCGAATGTTTCCTGCAGATGAAGACCCCAAATTCTACACGACCAACGCAATGTCCTTTTTGTAAAACGTTAAACTATGCCGTGGAGTATAGAGGCGTGAAGACTAAAGAGGAAAAAGGGCAGGAACAAATCGAAGAACAAAGGGTGATAGAAGCAAAAATAAGAATGAGACAGCAGGAAATTCAAGATGAAGAAGAAAGAATGTTGAAAAAGCAAGAGAGAAGTTCTTCAAGTAGGATAATTGATTCAAATGAAGCTGAATATTTCTCTAGACCAGCAAGGTCTTCTTCAGAAGAAGGTGAGGAAATTGTTTCTGCTCCTAATTCAGGTTTACCACCAATTAGACATCCGCAACCCTCTAGGGACATCAGGTATGCATTTATCTAG 627 42.58 MGNKLGRRRQVVDEKYTRPQGLYQHKDVDHKKLRKLILDSKLAPCYPGDDDCSCDLEECPICFLYYPSLNRSRCCTKGICTECFLQMKTPNSTRPTQCPFCKTLNYAVEYRGVKTKEEKGQEQIEEQRVIEAKIRMRQQEIQDEEERMLKKQERSSSSRIIDSNEAEYFSRPARSSSEEGEEIVSAPNSGLPPIRHPQPSRDIRYAFI 208
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo4g02904 208 ProSiteProfiles Zinc finger RING-type profile. 59 102 IPR001841 -
Tamo4g02904 208 Coils Coil 134 154 - -
Tamo4g02904 208 MobiDBLite consensus disorder prediction 143 208 - -
Tamo4g02904 208 MobiDBLite consensus disorder prediction 143 160 - -
Tamo4g02904 208 PANTHER PROTEIN SIP5 1 187 IPR039301 GO:0005737(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo4g02904 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tamo Tamo-Chr1:106918553 Tamo4g02904 Tamo-Chr4:55313785 wgd