AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo4g02920 ATGGTTTCTTCTTCCACTTCTACTTCTACTTCTACTACTACTACTTGGACTAATCCCAGAAACAAATTTGTGTCTTCTTCAAAAGATGTATTGGGTTCATCTTCTTCCTCGATTTCTTTCTGTAAAAAACCCAATGCTCGGACTGCGCAGAATTCGATTCGTTGTGCTCTTCATACACCTTCGATTCTCCAGTTTCCTAAACAGTCTTCGAAATCTTCTTCTACGGCGGTCCAACAAAATTGGAACTTGTTACAGAAAGTTGCAGCAATGGCATTGGACGCCGTAGAAGACGGATTGAAAGCTAGAGAGAAGTTACACGCTTTGCCGAAAACAGCGGACCCAAATGTTCAAATTGCCGGAAATTTCAGTCCAGTACCGGAACAGCCTGTGCGCCACTGTCTACCGGTTAGCGGGAAGATCCCGGAACACATTCAAGGAGTTTATTTGAGGAATGGAGCTAACCCGTTGTTCGAGCCTACCTCCGGCCACCATTTGTTTGACGGAGATGGTATGATTTACGCTGTGAAGTTCGATAACGGCTCAGCTAGCTACGCTTGCCGGTTTACAGAGACGCAGAGGCTTGTTCAGGAACGTGCTATCGGAAAACCGGTGTTTCCAAAAGCTATCGGTGAACTCCATGGTCATTCTGGCATCGCTAAGCTTATACTGTTTTACGCTCGTGGGTTGTGTGGTTTGATTGACGTCACTAAAGGGCTTGGGGTGGCGAACGCCGGTTTGGTTTACTTTAACAACCGGCTTTTGGCCATGTCGGAGGATGATTTGCCGTATCACGTGCGTGTAACGCCTTCCGGCGACTTGAAAACTGGCGGACGGTACAATTTCGACGAGCAGTTGAAGTCTACCATGATCGCACACCCAAAACTCGACCCAGTTTCAGGCGAGCTTTTCGCACTGAGCTACGATGTTATTCAGAAGCCTTACCTCAAATACTTCTGGTTTTCACCGGATGGCAAGAAATCAAAAGACGTTGCGATTGATTTGGGAAAGCCGACTATGGTTCATGATTTCGCAATCACGGAGAATTTCGTGGTGGTGCCGGACCACCAGGTGGTTTTCAAGATGTCAGAGATGATCACTGGTGGGTCACCGGTGGTGTACGACAAAGAGAAGGTTTCACGTTTTGGCGTTCTCGATAAATACGCAGAAAATGGGTCGGATATCAAATGGGTGGAAGTTCCGGATTGTTTCTGCTTTCATCTCTGGAACGCGTGGGAAGAACCAGAATCCGACGAGGTCGTCGTGATCGGCTCCTGCATGACTCCGGCCGACTCCATTTTCAACGAATGTAACGAAGAACTCAAAAGCGTGTTATCCGAAATCCGTCTTAATCTAAAAACCGGCAAATCCACTCGTCGACCCATAATCTCTCCCGAAAATGACGTCAATTTGGAAGCAGGGATGGTGAACAAAAACCTCCTCGGCCGGAAAGCCAAATACGCCTACCTTGCCATCGCCGAGCCATGGCCAAAGGTCTCTGGTTTTGCCAAAGTCGATCTTTCCACCGGCGAGACCCAGAAATTCATCTACGGAGATCAAAAATACGGCGGCGAGCCTCTGTTTCTTCCCAGAGACCCCAATTCCGAAACCGAAGACGACGGCCACATCTTGGCCTTCGTTCACGACGAGAAAACATGGAACTCCGAGCTCCAAATTGTGAATGCAATGACGATGGAATTAGAGGCGACAGTTAAGCTACCATCGAGGGTTCCATATGGTTTCCATGGAACCTTCATAAATGCCAAAGATTTGGCAACGCAAGCTTGA 1785 47.9 MVSSSTSTSTSTTTTWTNPRNKFVSSSKDVLGSSSSSISFCKKPNARTAQNSIRCALHTPSILQFPKQSSKSSSTAVQQNWNLLQKVAAMALDAVEDGLKAREKLHALPKTADPNVQIAGNFSPVPEQPVRHCLPVSGKIPEHIQGVYLRNGANPLFEPTSGHHLFDGDGMIYAVKFDNGSASYACRFTETQRLVQERAIGKPVFPKAIGELHGHSGIAKLILFYARGLCGLIDVTKGLGVANAGLVYFNNRLLAMSEDDLPYHVRVTPSGDLKTGGRYNFDEQLKSTMIAHPKLDPVSGELFALSYDVIQKPYLKYFWFSPDGKKSKDVAIDLGKPTMVHDFAITENFVVVPDHQVVFKMSEMITGGSPVVYDKEKVSRFGVLDKYAENGSDIKWVEVPDCFCFHLWNAWEEPESDEVVVIGSCMTPADSIFNECNEELKSVLSEIRLNLKTGKSTRRPIISPENDVNLEAGMVNKNLLGRKAKYAYLAIAEPWPKVSGFAKVDLSTGETQKFIYGDQKYGGEPLFLPRDPNSETEDDGHILAFVHDEKTWNSELQIVNAMTMELEATVKLPSRVPYGFHGTFINAKDLATQA 594
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo4g02920 594 Pfam Retinal pigment epithelial membrane protein 126 585 IPR004294 GO:0016702(InterPro)
Tamo4g02920 594 MobiDBLite consensus disorder prediction 1 41 - -
Tamo4g02920 594 PANTHER BETA-CAROTENE DIOXYGENASE 106 586 IPR004294 GO:0009570(PANTHER)|GO:0010436(PANTHER)|GO:0016121(PANTHER)|GO:0016702(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo4g02920 K09840 9-cis-epoxycarotenoid dioxygenase [EC:1.13.11.51]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tamo Tamo-Chr1:28767026 Tamo4g02920 Tamo-Chr4:55800356 dispersed
Tamo Tamo-Chr1:68392355 Tamo4g02920 Tamo-Chr4:55800356 dispersed
Tamo Tamo-Chr3:99817984 Tamo4g02920 Tamo-Chr4:55800356 dispersed
Tamo Tamo-Chr4:55800356 Tamo7g00859 Tamo-Chr7:12566580 dispersed
Tamo Tamo-Chr1:971784 Tamo4g02920 Tamo-Chr4:55800356 transposed
Tamo Tamo-Chr1:117880695 Tamo4g02920 Tamo-Chr4:55800356 transposed
Tamo Tamo-Chr8:66288092 Tamo4g02920 Tamo-Chr4:55800356 transposed
Tamo Tamo-Chr1:107062151 Tamo4g02920 Tamo-Chr4:55800356 wgd