AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tamo4g02941 | ATGCTTCGCGTTTTGAAGAAATTACCTTTCAATAGCGTCACTCGCCGTCGAGGGATGACCACCAGCGCCACCGTAATGAGTTTCGGAGACGGCAGCCATGGTGCTCTAGGCTTACCTACCTCCGTCACCGGAATCGGTTCCGACGCCTACGAACCTACTCCAATCCCATCCCTACCTCCCGACGTCTCCAGCATTGCCGCAGGTCACTACCACTCTCTCGCCGTTACTTCCCAAGGCCACATCTGGTCTTGGGGACGCAACGCTGAAGGACAACTTGGTCGCGCCATCGATTCCTCTAGAGAAACATGGGTCGAACCGCGACGAATAGAAGGATTAAGCGGTGTAAAATCAGCATATGCATCGGGTGTTGTTTCCGCAGCAATTGGAACCGACGGATCTGTGTGGATTTGGGGGAAATCAAAACGCGGTCAATTAGGTCTCGGAATCGGAATCACGGACTCCGTAACTCCAACCAGAATAAAAGCTCTTGCAAAAGAAGAGATCGTTAAGGTTTCATTTGGATGGGGACACGCTCTCGCACTTACCAAAACCGGAAAGTTGTTCGGTTGGGGTTATTCAGCAGACGGTAGATTAGGAAAGAGAGAAATTACAGTAACATCCCCACTCGATTCCGTAACTAACCTATCTTCAACTTTGAAGATTGAAGAAGCTGAAAAACTAGTATCGGAATCCATGGATAAAGAGAACGATATGCCTATCATTTGGGAGCCATGTTTGATTAACGAGCTAAAATATGCAGAAGTTGCTGACGTGTCATGTGGACTTGACCACACCTTGGTCCTTCTACGTGATGGGACTTTACTTAGTGGTGGAAGCAATATATACGGGCAATTGGGAAGATCATCAACACAAGATCTGGAGTTACTTCCTGTTGATATAAGTGTCCATCCTGTTTCAATTTCCTCAGGGCTAGGGCATTCATTAGCTATATGCCAGATCCCGTCTTCAGAAGGTGGTGAAGGTATCTCAGGGGTGTTTTCATGGGGATGGGGGCAGAATCGTCAACTTGGGAGAGAAGGTCCGGGGAATATTCCGTTGCTTGTGGACGGGCTTTTAGGAGAGAAGCCTGTGGTGGTGTCGGGTGGGCGGGTCCACTCCATTGCTCTCACGGATAATGGAGAGGTTTTTGCTTGGGGGTGTGGGAGAAATGGGAGACTTGGGTTGGGGAGTTCTGTAGATGAACCTGAACCTATTGTGGTTGAGTTTGATGAAGATGTTAATGTTTTGCAAGTTGTGTCAGGGTTTGATCATAATTTAGTGCTAACTAGCTGA | 1293 | 48.18 | MLRVLKKLPFNSVTRRRGMTTSATVMSFGDGSHGALGLPTSVTGIGSDAYEPTPIPSLPPDVSSIAAGHYHSLAVTSQGHIWSWGRNAEGQLGRAIDSSRETWVEPRRIEGLSGVKSAYASGVVSAAIGTDGSVWIWGKSKRGQLGLGIGITDSVTPTRIKALAKEEIVKVSFGWGHALALTKTGKLFGWGYSADGRLGKREITVTSPLDSVTNLSSTLKIEEAEKLVSESMDKENDMPIIWEPCLINELKYAEVADVSCGLDHTLVLLRDGTLLSGGSNIYGQLGRSSTQDLELLPVDISVHPVSISSGLGHSLAICQIPSSEGGEGISGVFSWGWGQNRQLGREGPGNIPLLVDGLLGEKPVVVSGGRVHSIALTDNGEVFAWGCGRNGRLGLGSSVDEPEPIVVEFDEDVNVLQVVSGFDHNLVLTS | 430 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tamo4g02941 | 430 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 79 | 139 | IPR000408 | - | |
| Tamo4g02941 | 430 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 380 | 430 | IPR000408 | - | |
| Tamo4g02941 | 430 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 132 | 184 | IPR000408 | - | |
| Tamo4g02941 | 430 | Gene3D | - | 230 | 430 | IPR009091 | - | |
| Tamo4g02941 | 430 | Gene3D | - | 12 | 228 | IPR009091 | - | |
| Tamo4g02941 | 430 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 258 | 268 | IPR000408 | - | |
| Tamo4g02941 | 430 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 330 | 379 | IPR000408 | - | |
| Tamo4g02941 | 430 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 23 | 78 | IPR000408 | - | |
| Tamo4g02941 | 430 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 185 | 271 | IPR000408 | - | |
| Tamo4g02941 | 430 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 272 | 320 | IPR000408 | - | |
| Tamo4g02941 | 430 | PRINTS | Chromosome condensation regulator RCC1 signature | 24 | 40 | IPR000408 | - | |
| Tamo4g02941 | 430 | PRINTS | Chromosome condensation regulator RCC1 signature | 171 | 187 | IPR000408 | - | |
| Tamo4g02941 | 430 | PRINTS | Chromosome condensation regulator RCC1 signature | 81 | 97 | IPR000408 | - | |
| Tamo4g02941 | 430 | PRINTS | Chromosome condensation regulator RCC1 signature | 62 | 75 | IPR000408 | - | |
| Tamo4g02941 | 430 | PRINTS | Chromosome condensation regulator RCC1 signature | 187 | 201 | IPR000408 | - | |
| Tamo4g02941 | 430 | PRINTS | Chromosome condensation regulator RCC1 signature | 132 | 148 | IPR000408 | - | |
| Tamo4g02941 | 430 | PRINTS | Chromosome condensation regulator RCC1 signature | 375 | 396 | IPR000408 | - | |
| Tamo4g02941 | 430 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 131 | 181 | IPR000408 | - | |
| Tamo4g02941 | 430 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 379 | 428 | IPR000408 | - | |
| Tamo4g02941 | 430 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 332 | 376 | IPR000408 | - | |
| Tamo4g02941 | 430 | SUPERFAMILY | RCC1-BLIP-II | 332 | 429 | IPR009091 | - | |
| Tamo4g02941 | 430 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 255 | 284 | - | - | |
| Tamo4g02941 | 430 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 62 | 91 | - | - | |
| Tamo4g02941 | 430 | SUPERFAMILY | RCC1-BLIP-II | 20 | 344 | IPR009091 | - | |
| Tamo4g02941 | 430 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 20 | 429 | IPR051210 | - | |
| Tamo4g02941 | 430 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 65 | 75 | IPR000408 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tamo4g02941 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Tamo | Tamo-Chr8:5216251 | Tamo4g02941 | Tamo-Chr4:55997726 | dispersed | |
| Tamo | Tamo-Chr4:55997726 | Tamo1g00778 | Tamo-Chr1:13449179 | transposed |