Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tamo4g03048	ATGGACTTTTCAGAATCTACGAAAATCGTATACGATAGGATCCAAAAAATCGATCCTGAAAATGTCTCCAAGATTGTCGGATACCTTCTTCTACAAGATCATGGTGAAAGAGAAATGATAAGATTAGCATATTGCCCTGATAACTTAATCCACTCATTAATCAAAAAAGCAAAATCCCACCTCAATTTACTACCGAATTCCAAAATCCCCGAAATGCCCCTACACTTCACACCATTCACACCTTCAACCCCTACCACCCGCCATTCTCCATTGACCATCCAAATCCCAAGTCAACCCGTTGACTATCTCCCCATGGTCAACTACCCCGCTTCATTTCCCGAAGACTACAATCTTATCCACAACCACAACCGCCTTCGTTTCGAAGACCCGTTCGACTCGGTTAACTCGGATTTTTCACTAGGTCATATTAGAGCCAATAGGAGGTCGCCAAGTCTACCCGAATTCCCCTTCAAAGTTTGCCATTACTTCATTAAAGGATTCTGTAGACATGGAAACAACTGTAGGTACTTACACCCTACATCCGAACTAACCTTCAATTACTTGGAGGACGAAACCGTCTTTTCACCAGGGTCACTTGAGAAACTCGAATTAGAACTCACTGAGCTTTTGAAAGCAAGAAAAGGTTTCCCACTTTCAATAGCTTCTTTACCAATGATGTATTATGAGAAATTCGGTAAGTCACTTCAAGCCGAAGGGTATTTGACCGAAAGTCAAAGGCACGGGAAGGCAGGGTATAGTTTGACTAAACTTCTCGCGAGGCTTAAAAGCATTTGTTTGATTGATAGACCGCATGGACAACACGCGGTTATTTTAGCTGATGACCTGGCAAAATGTATGGATCATAATGGAGATAGGGATAATTATAGGGATAGAAATGAACATGGTGGTATAGTTGCGGGGTCTAAACAAATATATTTGACTTTTCCCGCCGAAAGTACCTTTTCGGAACGTGACGTTTTCAACTACTTCAACAAATTTGGGGCGGTACATGATGTCAGGATTCCATGTCAGCAAAAGAGAATGTTTGGATTTGTGACTTTTTTACATTCGGAAACGGTTCGACATATTTTGAACAAAGGAAACCCTCATTTTGTAAGCGGGGCACGTGTTTTGGTCAAACCCTACCGCGAGAAATCTAAGCCGGATGATAGGAAACATGGAGAGACATTTCAAGCATCTATGTATCAAGGTGGTCATGGCCTTGATAATGAAATTGGACTGCAGTCAATGCCAAGAATTTGTGACAATTCAAGGCTAATCAAGAAACAATTAATCGAAGAACAACAAGAACAAGCACTTGAATTTGAAAGAAGACATTTCTCAGAAATGCAATTATCTTCAGATCCCAATTACAAATTTCCATGTTTTAGAACCTCACTTGAAGAGTTGAGGCTACCAGAAGGCAATTCTCATGGACAACAAATGAATTTTCGTTATCTTTTAGATTATCTCAACAATGGTCCTTCAAATGATGAAAGAATTAGGCAGATAAACACCAAGTATAATGAAGAGAGTAGTCAGGGGATAAATCTTCCGGACAGCCCATTTGCACCTGCTTTAGGGGGTGAAATACCGACAGTTATATAG	1608	40.55	MDFSESTKIVYDRIQKIDPENVSKIVGYLLLQDHGEREMIRLAYCPDNLIHSLIKKAKSHLNLLPNSKIPEMPLHFTPFTPSTPTTRHSPLTIQIPSQPVDYLPMVNYPASFPEDYNLIHNHNRLRFEDPFDSVNSDFSLGHIRANRRSPSLPEFPFKVCHYFIKGFCRHGNNCRYLHPTSELTFNYLEDETVFSPGSLEKLELELTELLKARKGFPLSIASLPMMYYEKFGKSLQAEGYLTESQRHGKAGYSLTKLLARLKSICLIDRPHGQHAVILADDLAKCMDHNGDRDNYRDRNEHGGIVAGSKQIYLTFPAESTFSERDVFNYFNKFGAVHDVRIPCQQKRMFGFVTFLHSETVRHILNKGNPHFVSGARVLVKPYREKSKPDDRKHGETFQASMYQGGHGLDNEIGLQSMPRICDNSRLIKKQLIEEQQEQALEFERRHFSEMQLSSDPNYKFPCFRTSLEELRLPEGNSHGQQMNFRYLLDYLNNGPSNDERIRQINTKYNEESSQGINLPDSPFAPALGGEIPTVI	535

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tamo4g03048	535	SMART	c3hfinal6	156	180	IPR000571	GO:0046872(InterPro)
	Tamo4g03048	535	CDD	RRM-AtC3H46-like	311	380	IPR034365	-
	Tamo4g03048	535	Gene3D	-	316	410	IPR012677	-
	Tamo4g03048	535	PANTHER	RNA-BINDING (RRM-RBD-RNP MOTIFS)	1	524	-	-
	Tamo4g03048	535	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	309	384	IPR000504	GO:0003723(InterPro)
	Tamo4g03048	535	ProSiteProfiles	OST-type HTH domain profile.	198	281	IPR025605	-
	Tamo4g03048	535	SUPERFAMILY	RNA-binding domain, RBD	321	400	IPR035979	GO:0003676(InterPro)
	Tamo4g03048	535	Gene3D	-	155	234	-	-
	Tamo4g03048	535	SUPERFAMILY	CCCH zinc finger	157	179	IPR036855	GO:0046872(InterPro)
	Tamo4g03048	535	Pfam	RNA recognition motif	321	370	IPR000504	GO:0003723(InterPro)
	Tamo4g03048	535	FunFam	zinc finger CCCH domain-containing protein 53-like isoform X2	316	387	-	-
	Tamo4g03048	535	ProSiteProfiles	Zinc finger C3H1-type profile.	154	181	IPR000571	GO:0046872(InterPro)
	Tamo4g03048	535	SMART	rrm1-1	310	380	IPR000504	GO:0003723(InterPro)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tamo4g03048	-	-

Event-related genes

Select	Gene_1	Gene_2	Event_name
	166331	Tamo2g00020	Tamo4g03048

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Tamo	Tamo-Chr2:1142917	Tamo4g03048	Tamo-Chr4:58246561	dispersed
	Tamo	Tamo-Chr2:74217966	Tamo4g03048	Tamo-Chr4:58246561	dispersed
	Tamo	Tamo-Chr4:58246561	Tamo7g04247	Tamo-Chr7:86175663	dispersed