AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo4g03059 ATGGGTAAGTTCTTGAGTCTTCTTTTTTGCATCTTGATATCGAATCTCGCCGGATTAAATGCTCAATCTTGCGAAACTGCCGCCTTTCGAAACAACGCTATCTACCGCACCTGCGTCTCTTTACCGGTTCTGAACTCGCATCTTCACTGGAACTACAACACCAACGGCACCGTCGACTTGGCTTTCCGGCACACCGGATCAGCCACATCTCAATGGGTTGCGTGGGCCCTCAACGTCCGCGGGTCTGGTATGGACGGAGCTCAGGCGCTTGTTGCGTTAACGCACTCTAACGGCTCGGTTGAAGCTTACACTACTTCAGTCAATGGTTTCCAAACGACTTTACAGCCGAGCCGGTTGAGCTTTGACGTGCCGACGATAACGGCGGAGAGGGTTAACGGCGTTGTGGTGATTTACGCGACGATAGTGTTGCCTAGTGGAGGGACGGGATTTAATCAGGTCTGGCAAGTGGGCCCTGTTGCTGATGGAGTTCCCAGAATTCATGCAATGACTGCCGATAATCGGGGTTCTGTCGGAAGAGTTGATTTTATCTCCGGTCAGACTTCCGCCGGCGGTGGTGCTGGTGGCTCGAGGCAGCGCAAGAGAAACACTCATGGAGTACTAAACGCTGTTAGTTGGGGATTATTGATGCCCATGGGAGCTATGGCAGCAAGATATCTTAAGGTGTTCAAAGTAGCAAATCCGGCCTGGTTTTACATCCACGCCGCTTGCCAAACTTCAGCCTACATCGTCGGCGTCGCTGGATGGGCCACCGGACTCAAACTCGGCGGCGACTCCGTCGGAATCAGATACGACGCTCACCGAAACATCGGGATCATTCTCTTTTCACTTGGAACACTTCAGGTTTTCGCCCTGCTTTTGAGACCTAAACCCGATAACAAATACAGAATCTACTGGAACGTGTACCATCACGGAATTGGATACGCCGTCATCTCTCTGAGCATTATTAATGTGTACAAAGGGCTTGATATCTTGGACCCTGAGAAGAAATGGAAGCACGCGTACACCGGAATACTCATCGGATTGGGGGTGGTCGCCGTCTTGTTGGAAGCTTTGACATGGTTTATTGTATTGAAGAGGAAGAAGGAAGACAAGAGGACACATGCCGGAGCTAATGGATATGGCCAGCCGGTGTAA 1155 51.08 MGKFLSLLFCILISNLAGLNAQSCETAAFRNNAIYRTCVSLPVLNSHLHWNYNTNGTVDLAFRHTGSATSQWVAWALNVRGSGMDGAQALVALTHSNGSVEAYTTSVNGFQTTLQPSRLSFDVPTITAERVNGVVVIYATIVLPSGGTGFNQVWQVGPVADGVPRIHAMTADNRGSVGRVDFISGQTSAGGGAGGSRQRKRNTHGVLNAVSWGLLMPMGAMAARYLKVFKVANPAWFYIHAACQTSAYIVGVAGWATGLKLGGDSVGIRYDAHRNIGIILFSLGTLQVFALLLRPKPDNKYRIYWNVYHHGIGYAVISLSIINVYKGLDILDPEKKWKHAYTGILIGLGVVAVLLEALTWFIVLKRKKEDKRTHAGANGYGQPV 384
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo4g03059 384 PANTHER CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEIN 6 368 - -
Tamo4g03059 384 FunFam Cytochrome b561 and DOMON domain-containing protein 182 372 - -
Tamo4g03059 384 ProSiteProfiles DOMON domain profile. 44 157 IPR005018 -
Tamo4g03059 384 Pfam Eukaryotic cytochrome b561 204 328 IPR006593 -
Tamo4g03059 384 CDD DOMON-CIL1-like 35 184 IPR045265 -
Tamo4g03059 384 SMART 561-7 203 328 IPR006593 -
Tamo4g03059 384 Pfam Protein of unknown function (DUF568) 84 182 IPR045265 -
Tamo4g03059 384 Gene3D - 184 374 - -
Tamo4g03059 384 CDD Cyt-b561-FRRS1-like 180 357 - -
Tamo4g03059 384 PIRSF UCP037471 1 382 IPR017214 -
Tamo4g03059 384 ProSiteProfiles Cytochrome b561 domain profile. 163 364 IPR006593 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo4g03059 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
166047 Tamo1g04425 Tamo4g03059
166048 Tamo1g04427 Tamo4g03059
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tamo Tamo-Chr1:106362912 Tamo4g03059 Tamo-Chr4:58376918 dispersed
Tamo Tamo-Chr1:106375081 Tamo4g03059 Tamo-Chr4:58376918 dispersed
Tamo Tamo-Chr4:4918813 Tamo4g03059 Tamo-Chr4:58376918 dispersed
Tamo Tamo-Chr4:58376918 Tamo8g03607 Tamo-Chr8:76364158 dispersed
Tamo Tamo-Chr4:58376918 Tamo8g03620 Tamo-Chr8:76553507 transposed