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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo4g03077 ATGTCGTTGGCCGTTGAAGCTGTTTCCAGTTCCACTAACATGGGACTCGAAGAAAATAAAGAAAAGAAAAGTGAAATTGAAGATAATGGAGATGAAAAAGAAAGCGAATCCTCCATTTATGAAACTGAAGATGAAGGAGAAGATTCACAAACTCCTAAAATCGACTTGGGTCCTCAATTCACCCTCAAAGAACAATTCGAGAAAGACAAGGATGACGAGAGTCTCAGAAAATGGAAAGAACAGCTACTTGGTAACGTCGACATTAACACCGTTGGAGAATCACTAGAGCCAGAAGTGAAGATCATCAGTCTTTCCATACTATCTCCCGAAAGATCCGACATTGTTCTTGCGATACCCGAAGATGGAAAACCGAAAGGACCATGGTTTACTTTAAAAGAAGGAAGTCGTTACAGTTTACGATTCTCATTTCAAGTTTGCCGTAACATAGTTTCAGGTTTAAAGTACACCAATAACGTATGGAAAACCGGCGTCAAGGTGGATGGCGTGAAACAGATGCTTGGTACTTTTAGTCCCCAACAAGAAGCATACACTTATGACATGCCAGAAGAGACCACCCCTTCTGGTTATTTTGCAAGAGGTTCTTATTCTGCTAAAACTAAGCCATTTTGCAAGAGGGTTATGCGAATTTTGATAAAAGTGTTTTAA 666 39.94 MSLAVEAVSSSTNMGLEENKEKKSEIEDNGDEKESESSIYETEDEGEDSQTPKIDLGPQFTLKEQFEKDKDDESLRKWKEQLLGNVDINTVGESLEPEVKIISLSILSPERSDIVLAIPEDGKPKGPWFTLKEGSRYSLRFSFQVCRNIVSGLKYTNNVWKTGVKVDGVKQMLGTFSPQQEAYTYDMPEETTPSGYFARGSYSAKTKPFCKRVMRILIKVF 221
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo4g03077 221 FunFam Rho GDP-dissociation inhibitor 1 52 217 - -
Tamo4g03077 221 Gene3D Coagulation Factor XIII, subunit A, domain 1 52 213 IPR024792 -
Tamo4g03077 221 MobiDBLite consensus disorder prediction 16 36 - -
Tamo4g03077 221 PANTHER RHO GDP-DISSOCIATION INHIBITOR 31 207 IPR000406 GO:0005094(PANTHER)|GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0005829(PANTHER)|GO:0007266(InterPro)|GO:0007266(PANTHER)|GO:0016020(PANTHER)
Tamo4g03077 221 Coils Coil 16 36 - -
Tamo4g03077 221 Pfam RHO protein GDP dissociation inhibitor 42 207 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Tamo4g03077 221 MobiDBLite consensus disorder prediction 1 58 - -
Tamo4g03077 221 SUPERFAMILY E set domains 35 207 IPR014756 -
Tamo4g03077 221 PRINTS RHO protein GDP dissociation inhibitor signature 149 165 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Tamo4g03077 221 PRINTS RHO protein GDP dissociation inhibitor signature 182 194 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Tamo4g03077 221 PRINTS RHO protein GDP dissociation inhibitor signature 166 181 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Tamo4g03077 221 MobiDBLite consensus disorder prediction 1 15 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo4g03077 K12462 Rho GDP-dissociation inhibitor
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Event-related genes

Select Gene_1 Gene_2 Event_name
166334 Tamo2g00033 Tamo4g03077
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tamo Tamo-Chr2:1297165 Tamo4g03077 Tamo-Chr4:58778723 dispersed
Tamo Tamo-Chr3:89613585 Tamo4g03077 Tamo-Chr4:58778723 dispersed
Tamo Tamo-Chr4:58778723 Tamo7g04373 Tamo-Chr7:87427166 dispersed