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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo4g03111 ATGAAACTAGACCAGGAACTCAACCAGCATGGCCGTGACATCATCAGAACAATCGAAGTAGTTCAATCCGTTAAGAAGCTATCAACTACAGCCGTTGATAACTTCGATTCGAATGGGGAAGAGCTCTACACGCCTCCGCTTAATTTCTCCATGGTTGATAATGGCATATACCGTTCAGGATTCCCCGATACCTCCAACTTCTCGTTTCTCAAAACCCTAGGCCTTCGCTCTATCGTATATTTGTGTCCTGAACCATATCCGGAGCATAACATGGAATTTCTGAAGGCTAATCGGATTCAATTATTTCAATTCGGGATTGAAGGCACTAAGGAACCTTTTGTAAATATACCAGAGGACACAATTCGAGAAGCACTAAAAGTCGTTCTAGATGTAAGAAACCACCCATTATTGATCCATTGCAAAAGAGGCAAGCATCGAACTGGTTGTTTAGTTGGATGCATGAGAAAAATACAGAGATGGTGTTTGACGTCTATTTTTGATGAGTACCAAAGGTTTGCAGCTGGTAAGGCTAGAATTTCAGATCAGAGATTTATTGAGCTTTTTGATGCTTCTGGATTTAAGGATATTCCACCATGTCCATGTTCGTGTTCTAAGAGGAGGTAA 624 41.19 MKLDQELNQHGRDIIRTIEVVQSVKKLSTTAVDNFDSNGEELYTPPLNFSMVDNGIYRSGFPDTSNFSFLKTLGLRSIVYLCPEPYPEHNMEFLKANRIQLFQFGIEGTKEPFVNIPEDTIREALKVVLDVRNHPLLIHCKRGKHRTGCLVGCMRKIQRWCLTSIFDEYQRFAAGKARISDQRFIELFDASGFKDIPPCPCSCSKRR 207
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo4g03111 207 Gene3D Protein tyrosine phosphatase superfamily 43 192 IPR029021 -
Tamo4g03111 207 PANTHER TYROSINE-PROTEIN PHOSPHATASE 38 196 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
Tamo4g03111 207 Pfam Tyrosine phosphatase family 45 194 IPR004861 -
Tamo4g03111 207 PRINTS Plant and fungal dual specificity phosphatase signature 116 130 IPR020428 GO:0016791(InterPro)
Tamo4g03111 207 PRINTS Plant and fungal dual specificity phosphatase signature 43 60 IPR020428 GO:0016791(InterPro)
Tamo4g03111 207 PRINTS Plant and fungal dual specificity phosphatase signature 99 113 IPR020428 GO:0016791(InterPro)
Tamo4g03111 207 PRINTS Plant and fungal dual specificity phosphatase signature 80 93 IPR020428 GO:0016791(InterPro)
Tamo4g03111 207 CDD PFA-DSP-Siw14 42 189 - -
Tamo4g03111 207 ProSiteProfiles Dual specificity protein phosphatase domain profile. 48 199 IPR020422 GO:0006470(InterPro)
Tamo4g03111 207 ProSitePatterns Tyrosine specific protein phosphatases active site. 138 148 IPR016130 GO:0016311(InterPro)
Tamo4g03111 207 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 43 189 IPR029021 -
Tamo4g03111 207 FunFam probable tyrosine-protein phosphatase At1g05000 42 192 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo4g03111 K18045 tyrosine-protein phosphatase SIW14 [EC:3.1.3.48]
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Event-related genes

Select Gene_1 Gene_2 Event_name
166335 Tamo2g00067 Tamo4g03111
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tamo Tamo-Chr2:70880928 Tamo4g03111 Tamo-Chr4:60093546 transposed
Tamo Tamo-Chr4:20628129 Tamo4g03111 Tamo-Chr4:60093546 transposed
Tamo Tamo-Chr2:1693735 Tamo4g03111 Tamo-Chr4:60093546 wgd
Tamo Tamo-Chr4:60093546 Tamo7g00426 Tamo-Chr7:5561001 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tamo1g01912 . 75 159 Protein tyrosine phosphatase (PTP) family AT3G01510 30.588 1.95e-08 52.4
Tamo1g03140 . 21 190 Protein tyrosine phosphatase (PTP) family AT3G23610 61.765 1.39e-73 219.0
Tamo1g03217 . 1160 1196 Protein tyrosine phosphatase (PTP) family AT5G58160 62.5 6.00e-07 48.1
Tamo1g03473 ACH 1 397 Protein tyrosine phosphatase (PTP) family AT5G58160 68.159 0.0 589.0
Tamo1g04416 . 1 257 Protein tyrosine phosphatase (PTP) family AT2G04550 58.909 1.68e-106 307.0
Tamo1g05396 . 138 296 Protein tyrosine phosphatase (PTP) family AT3G10550 47.17 6.46e-43 149.0
Tamo1g05785 . 67 187 Protein tyrosine phosphatase (PTP) family AT3G23610 38.525 3.75e-19 82.0
Tamo1g05794 . 36 335 Protein tyrosine phosphatase (PTP) family AT1G71860 64.918 4.84e-145 414.0
Tamo1g05795 . 36 335 Protein tyrosine phosphatase (PTP) family AT1G71860 57.329 1.81e-117 341.0
Tamo2g00067 ACH 12 203 Protein tyrosine phosphatase (PTP) family AT1G05000 66.146 1.34e-87 255.0
Tamo2g00227 . 29 359 Protein tyrosine phosphatase (PTP) family AT3G19420 77.286 0.0 557.0
Tamo2g02889 . 8 191 Protein tyrosine phosphatase (PTP) family AT3G02800 62.5 1.11e-84 248.0
Tamo2g04798 . 1 378 Protein tyrosine phosphatase (PTP) family AT3G52180 58.684 4.19e-153 436.0
Tamo3g03152 . 14 758 Protein tyrosine phosphatase (PTP) family AT5G23720 59.787 0.0 854.0
Tamo3g03724 . 464 534 Protein tyrosine phosphatase (PTP) family AT3G01510 36.62 7.78e-08 49.7
Tamo4g00154 . 1 576 Protein tyrosine phosphatase (PTP) family AT5G01290 53.566 0.0 611.0
Tamo4g01492 . 15 186 Protein tyrosine phosphatase (PTP) family AT3G02800 67.442 6.08e-86 251.0
Tamo4g03111 ACH 20 215 Protein tyrosine phosphatase (PTP) family AT1G05000 70.051 3.12e-98 282.0
Tamo5g00830 . 34 209 Protein tyrosine phosphatase (PTP) family AT5G56610 73.864 9.43e-99 287.0
Tamo5g01311 . 5 348 Protein tyrosine phosphatase (PTP) family AT3G09100 54.907 5.33e-134 390.0
Tamo5g02235 . 1135 1233 Protein tyrosine phosphatase (PTP) family AT5G58160 69.697 2.91e-40 144.0
Tamo5g04277 . 199 313 Protein tyrosine phosphatase (PTP) family AT5G04540 66.087 1.40e-49 166.0
Tamo6g00028 . 570 639 Protein tyrosine phosphatase (PTP) family AT5G58160 32.857 6.97e-06 44.7
Tamo6g02223 . 36 396 Protein tyrosine phosphatase (PTP) family AT5G39400 47.123 2.34e-107 318.0
Tamo6g02224 . 36 396 Protein tyrosine phosphatase (PTP) family AT5G39400 52.632 3.03e-131 379.0
Tamo6g02226 . 1 396 Protein tyrosine phosphatase (PTP) family AT5G39400 58.145 2.71e-166 471.0
Tamo6g03652 . 1 312 Protein tyrosine phosphatase (PTP) family AT2G35680 55.128 1.73e-111 323.0
Tamo6g03655 . 189 611 Protein tyrosine phosphatase (PTP) family AT3G19420 63.357 0.0 544.0
Tamo7g00426 . 47 203 Protein tyrosine phosphatase (PTP) family AT1G05000 62.893 6.66e-73 218.0
Tamo7g01238 . 34 227 Protein tyrosine phosphatase (PTP) family AT5G56610 70.918 2.01e-100 291.0
Tamo7g02412 . 265 337 Protein tyrosine phosphatase (PTP) family AT3G52180 38.667 3.32e-07 50.4
Tamo8g01668 . 9 239 Protein tyrosine phosphatase (PTP) family AT3G44620 62.241 4.12e-100 290.0