AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo4g03124 ATGTGCGATGAAGCTGAGTCTATCATATATACCCGACGAGGTCGATACGTGAACTCTCACGCAAGAAAACCAAAAATGGAAGAAACTCCGACCACCAACATCGGCGGAGACGCCCATCAGGAAATGATCGCAGCATTCTCAGAGATAACTTCTGCTTCCAAAGAAGAAGCCTCATTCTTCCTCGAATCGCACAACTTCGATCTCGATTCCGCCATCTCCACCTTCTTCGAAAACGCTGCTGTCGCAGAAGAGGCTCCTATCGCTGCCTTACCTGCCCGAAACCCTAACCGTCCTTCCGATACACATTCCCCTTCGTTTTCTCCATCATCTTCCCCGTCTCGCTCCCGATCAGCATCCCCACCGCCTTCTCTCGGTTTACAACAAATGGCCGGTGGCAATCCTTACAATCTACGATCCAGGAATCCCGCTACTGATAAGAAGCCATCAGGTAGTCGGTCCACTGGACGCATACGGACTTTCGCAGATCTGAATCGACCGGATGATGACTCAGGAAGTGACTCGGACGAGCCTCAGGAGTATTATACTGGTGGTGAAAAGAGTGGGATGCTTGTTCAAGATCCAACAAGGGCGAATGATGTGGAATCATTGTTCAATCAAGCCAGACAAGCAGGAGCTGAAGAAGGAACTCTCGAACAACTCCAGCCATCTTCAAGCTCCAGAAGCTTTGCCGGAAGAGGAAGATTACTATCTGGAGAGACAACATCAGCTACTCCTCAACAGTCCGAACCTGATGTTCACACACACACCATCACTTTCTGGACCAATGGTTTCACTGTAAACGATGGTCCTCTAAGGAGACTCGATGACCCCCAAAATGCATCTTTCCTTGAGAGTATTAGGAAGTCCGAGTGTCCAGAAGAGCTTAGGCCTGCAAAAGGAAGAGCTCCTGTTCATGTCAGTCTTGTGAGGAAGATGGAAGACTATCCTGTCCAGAAACACCGCCCCACTGCCTTTGTGGGAGTGGGCAGAACCGTAGGAACCACCACCACGACACCAGAAGCCACCACCACCATCACCCCGCCGCCTGCCACCACCGCACCAACCCCACTGGCGGGACTGGTGGTGGACAACACCTTACCTTCCACCTCAATTCAACTGCGATTGGGTGATGGGACCCGGATGGTTTCACGGTTCAATTTCCACCACACGGTTGGTGATATCAGATCTTTTATTGATGCATCAAGGCCTGGAGGTCCAAGAGCTTATCAGCTGTTGACAATGGGGTTCCCTCCAAAACAGCTGACTGATTTGAACCAGACGATTGAAGGAGCTGGGCTGGCTAACTCGGTTGTGATTCAGAAACTCTAG 1329 50.79 MCDEAESIIYTRRGRYVNSHARKPKMEETPTTNIGGDAHQEMIAAFSEITSASKEEASFFLESHNFDLDSAISTFFENAAVAEEAPIAALPARNPNRPSDTHSPSFSPSSSPSRSRSASPPPSLGLQQMAGGNPYNLRSRNPATDKKPSGSRSTGRIRTFADLNRPDDDSGSDSDEPQEYYTGGEKSGMLVQDPTRANDVESLFNQARQAGAEEGTLEQLQPSSSSRSFAGRGRLLSGETTSATPQQSEPDVHTHTITFWTNGFTVNDGPLRRLDDPQNASFLESIRKSECPEELRPAKGRAPVHVSLVRKMEDYPVQKHRPTAFVGVGRTVGTTTTTPEATTTITPPPATTAPTPLAGLVVDNTLPSTSIQLRLGDGTRMVSRFNFHHTVGDIRSFIDASRPGGPRAYQLLTMGFPPKQLTDLNQTIEGAGLANSVVIQKL 442
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo4g03124 442 MobiDBLite consensus disorder prediction 91 191 - -
Tamo4g03124 442 SUPERFAMILY Ubiquitin-like 325 440 IPR029071 -
Tamo4g03124 442 FunFam Plant UBX domain-containing protein 4 317 442 - -
Tamo4g03124 442 ProSiteProfiles SEP domain profile. 252 316 IPR012989 -
Tamo4g03124 442 CDD UBA-p47 41 78 - -
Tamo4g03124 442 MobiDBLite consensus disorder prediction 216 232 - -
Tamo4g03124 442 SUPERFAMILY UBA-like 38 78 IPR009060 GO:0005515(InterPro)
Tamo4g03124 442 MobiDBLite consensus disorder prediction 330 354 - -
Tamo4g03124 442 MobiDBLite consensus disorder prediction 96 158 - -
Tamo4g03124 442 Gene3D - 317 442 - -
Tamo4g03124 442 MobiDBLite consensus disorder prediction 212 232 - -
Tamo4g03124 442 Pfam UBX domain 367 441 IPR001012 GO:0005515(InterPro)
Tamo4g03124 442 FunFam Plant UBX domain-containing protein 4 252 314 - -
Tamo4g03124 442 Pfam UBA-like domain 40 79 - -
Tamo4g03124 442 Gene3D - 37 79 - -
Tamo4g03124 442 SUPERFAMILY NSFL1 (p97 ATPase) cofactor p47, SEP domain 247 337 IPR036241 -
Tamo4g03124 442 ProSiteProfiles UBX domain profile. 364 441 IPR001012 GO:0005515(InterPro)
Tamo4g03124 442 CDD UBX-UBXN2 370 441 - -
Tamo4g03124 442 PANTHER UBX DOMAIN CONTAINING PROTEIN 38 441 - GO:0000045(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0007030(PANTHER)|GO:0031468(PANTHER)|GO:0043130(PANTHER)|GO:0043161(PANTHER)|GO:0061025(PANTHER)
Tamo4g03124 442 MobiDBLite consensus disorder prediction 330 348 - -
Tamo4g03124 442 Gene3D SEP domain 252 314 IPR036241 -
Tamo4g03124 442 SMART ubx-3 363 442 IPR001012 GO:0005515(InterPro)
Tamo4g03124 442 Pfam SEP domain 257 330 IPR012989 -
Tamo4g03124 442 SMART faf-3 248 342 IPR012989 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo4g03124 K14012 UBX domain-containing protein 1
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tamo Tamo-Chr4:60354450 Tamo7g00440 Tamo-Chr7:5775473 wgd