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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo4g03127 ATGGCGAAGACAAAGCCTGGAAAGAAAGATTTAGATACTTATACTATCAAAGGAACCAACAAACTCGTTAGACCTGGAGACTGTGTATTGATGAGGCCTGCTGATTCCGATAAGCCACCGTACGTAGCGCGTGTGGAAAAGCTGGAGGCCGATCACCGGAACAATGTGAAGGTGAGAGTCAGGTGGTATTACCGGCCAGAGGAGTCACTCGGAGGAAGACGCCAGTTTCACGGCGTTAAGGAGCTGTTTTTATCCGATCATTACGACATGCAAAGTGCTCACACAATCGAAGGGAAGTGCATAGTTCATTCATTCAAAAACTACACCAAACTCGACAATGTCGGCACTGAAGACTATTTCTGTCGATTTGAATACAAAGCAGCTACCGGCGGTTTCACTCCAGATCGTGTTGCTGTGTACTGCAAGTGTGAAATGCCCTACAATCCAGATGATTTAATGGTTCAATGTGAAGGATGCAAGGACTGGTTCCATCCATCTTGTATGGGTATGACAATTGAAGAAGCAAAGAAACTGGAGCAGTTTCTGTGTTCTGATTGTTCATCTGATGATGATACAAAAGGGTTCCCAATTTCACAATCCACTGACGCCAAGATGGAGGTAAAACGCAGAAAGCAGAGATGA 642 45.02 MAKTKPGKKDLDTYTIKGTNKLVRPGDCVLMRPADSDKPPYVARVEKLEADHRNNVKVRVRWYYRPEESLGGRRQFHGVKELFLSDHYDMQSAHTIEGKCIVHSFKNYTKLDNVGTEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLEQFLCSDCSSDDDTKGFPISQSTDAKMEVKRRKQR 213
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo4g03127 213 Pfam PHD-finger 141 186 IPR019787 -
Tamo4g03127 213 ProSiteProfiles Zinc finger PHD-type profile. 138 189 IPR019787 -
Tamo4g03127 213 CDD BAH-BAHCC1 23 156 - -
Tamo4g03127 213 SUPERFAMILY FYVE-PHD zinc finger 130 189 IPR011011 -
Tamo4g03127 213 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682(InterPro)
Tamo4g03127 213 MobiDBLite consensus disorder prediction 188 213 - -
Tamo4g03127 213 FunFam Chromatin remodeling protein EBS 1 132 - -
Tamo4g03127 213 Pfam BAH domain 23 134 IPR001025 GO:0003682(InterPro)
Tamo4g03127 213 SMART BAH-4 21 136 IPR001025 GO:0003682(InterPro)
Tamo4g03127 213 SMART PHD-3 140 187 IPR001965 -
Tamo4g03127 213 Gene3D - 2 132 IPR043151 -
Tamo4g03127 213 PANTHER OS08G0421900 PROTEIN 1 195 - -
Tamo4g03127 213 FunFam Bromo-adjacent homology (BAH) domain-containing protein 133 204 - -
Tamo4g03127 213 ProSitePatterns Zinc finger PHD-type signature. 141 186 IPR019786 -
Tamo4g03127 213 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 133 203 IPR013083 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo4g03127 K25868 chromatin remodeling protein
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tamo Tamo-Chr1:107919918 Tamo4g03127 Tamo-Chr4:60393817 dispersed
Tamo Tamo-Chr4:60393817 Tamo8g03586 Tamo-Chr8:76109501 dispersed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tamo1g00098 . 198 394 Core DNA Replication Machinery family AT5G08020 23.762 3.33e-08 55.8
Tamo1g00166 . 491 559 Core DNA Replication Machinery family AT5G61000 35.714 2.10e-07 46.6
Tamo1g01029 . 90 764 Core DNA Replication Machinery family AT3G09660 68.794 0.0 962.0
Tamo1g01324 . 1010 2156 Core DNA Replication Machinery family AT1G08260 56.218 0.0 1302.0
Tamo1g01332 . 1 182 Core DNA Replication Machinery family AT3G55490 60.44 2.04e-80 235.0
Tamo1g01845 . 1 443 Core DNA Replication Machinery family AT1G67320 69.265 0.0 660.0
Tamo1g02173 . 356 549 Core DNA Replication Machinery family AT5G61000 23.98 4.27e-07 49.3
Tamo1g02516 . 888 1282 Core DNA Replication Machinery family AT1G08840 30.631 1.58e-38 153.0
Tamo1g02578 . 419 541 Core DNA Replication Machinery family AT1G08130 69.106 2.26e-53 178.0
Tamo1g02640 . 454 601 Core DNA Replication Machinery family AT5G08020 23.81 3.08e-07 50.8
Tamo1g02717 . 1 831 Core DNA Replication Machinery family AT5G44635 71.789 0.0 1235.0
Tamo1g02896 . 44 1095 Core DNA Replication Machinery family AT5G63960 82.403 0.0 1827.0
Tamo1g03901 . 1 636 Core DNA Replication Machinery family AT2G06510 64.623 0.0 861.0
Tamo1g04240 . 1 193 Core DNA Replication Machinery family AT1G80190 56.995 2.75e-78 231.0
Tamo1g04260 . 201 396 Core DNA Replication Machinery family AT5G08020 21.891 8.48e-10 57.0
Tamo1g04291 . 223 525 Core DNA Replication Machinery family AT5G08020 22.222 5.14e-17 81.3
Tamo1g05628 . 86 180 Core DNA Replication Machinery family AT2G42120 74.737 1.70e-44 147.0
Tamo2g00006 . 145 384 Core DNA Replication Machinery family AT5G08020 26.639 1.46e-13 74.7
Tamo2g00410 . 13 640 Core DNA Replication Machinery family AT2G14050 71.003 0.0 932.0
Tamo2g01579 . 194 381 Core DNA Replication Machinery family AT2G06510 24.242 1.09e-06 47.0
Tamo2g02226 . 424 564 Core DNA Replication Machinery family AT5G08020 27.586 3.49e-07 46.2
Tamo2g02461 . 1 213 Core DNA Replication Machinery family AT2G29680 45.455 1.22e-50 170.0
Tamo2g02468 . 102 500 Core DNA Replication Machinery family AT1G07270 62.162 0.0 525.0
Tamo2g02841 . 424 526 Core DNA Replication Machinery family AT5G22110 78.641 1.92e-56 180.0
Tamo2g02957 . 145 384 Core DNA Replication Machinery family AT5G08020 26.23 3.41e-13 72.0
Tamo2g03139 . 489 556 Core DNA Replication Machinery family AT5G61000 35.294 1.53e-07 46.6
Tamo2g03269 . 472 559 Core DNA Replication Machinery family AT5G61000 32.584 8.56e-08 48.1
Tamo2g03270 . 489 559 Core DNA Replication Machinery family AT5G61000 36.111 1.41e-08 49.3
Tamo2g04236 . 1 941 Core DNA Replication Machinery family AT5G67100 53.021 0.0 913.0
Tamo2g04300 . 111 192 Core DNA Replication Machinery family AT4G02110 39.024 2.18e-16 72.8
Tamo2g04448 . 141 251 Core DNA Replication Machinery family AT5G26680 36.036 7.42e-12 67.4
Tamo2g04690 . 18 361 Core DNA Replication Machinery family AT4G14700 49.87 1.97e-104 325.0
Tamo2g04770 . 1 354 Core DNA Replication Machinery family AT5G27740 88.136 0.0 660.0
Tamo3g00140 . 312 526 Core DNA Replication Machinery family AT5G08020 22.318 6.44e-10 58.2
Tamo3g00272 . 6 278 Core DNA Replication Machinery family AT3G02920 47.687 1.06e-86 258.0
Tamo3g00491 . 472 559 Core DNA Replication Machinery family AT5G61000 32.584 2.63e-07 46.6
Tamo3g00926 . 472 559 Core DNA Replication Machinery family AT5G61000 36.264 9.84e-07 45.8
Tamo3g00953 . 2 349 Core DNA Replication Machinery family AT5G27740 37.64 4.62e-80 258.0
Tamo3g01552 . 662 727 Core DNA Replication Machinery family AT5G45400 41.176 3.89e-08 51.6
Tamo3g01653 . 222 393 Core DNA Replication Machinery family AT5G08020 25.137 3.46e-07 50.4
Tamo3g01812 . 1 336 Core DNA Replication Machinery family AT1G21690 79.762 0.0 565.0
Tamo3g01863 . 221 275 Core DNA Replication Machinery family AT1G77470 74.545 2.26e-20 83.2
Tamo3g01925 . 198 543 Core DNA Replication Machinery family AT5G08020 23.823 3.16e-13 71.2
Tamo3g02196 . 153 309 Core DNA Replication Machinery family AT5G08020 22.981 2.04e-08 50.4
Tamo3g02220 . 122 384 Core DNA Replication Machinery family AT5G08020 24.275 7.38e-12 66.6
Tamo3g02278 . 343 593 Core DNA Replication Machinery family AT5G61000 26.848 1.13e-13 70.1
Tamo3g02439 . 197 574 Core DNA Replication Machinery family AT2G06510 23.445 4.75e-13 68.9
Tamo3g02617 . 1014 1289 Core DNA Replication Machinery family AT1G08840 30.537 5.28e-22 102.0
Tamo3g03287 . 3 311 Core DNA Replication Machinery family AT1G21690 25.146 2.69e-15 76.3
Tamo3g03352 . 472 560 Core DNA Replication Machinery family AT5G61000 35.484 1.46e-08 49.3
Tamo3g04083 . 9 287 Core DNA Replication Machinery family AT1G21690 23.333 1.67e-13 71.2
Tamo3g04192 . 212 1289 Core DNA Replication Machinery family AT1G08840 58.856 0.0 1280.0
Tamo3g04605 . 389 956 Core DNA Replication Machinery family AT5G22010 68.118 0.0 754.0
Tamo3g04690 . 8 156 Core DNA Replication Machinery family AT1G26840 47.651 1.47e-37 129.0
Tamo3g04703 . 768 1288 Core DNA Replication Machinery family AT1G08840 28.988 1.38e-46 176.0
Tamo4g00558 . 130 275 Core DNA Replication Machinery family AT2G29680 59.589 1.32e-59 191.0
Tamo4g01263 . 25 733 Core DNA Replication Machinery family AT5G16690 43.862 0.0 594.0
Tamo4g01264 . 1 124 Core DNA Replication Machinery family AT1G09815 53.175 4.16e-43 136.0
Tamo4g01272 . 9 474 Core DNA Replication Machinery family AT3G54710 29.352 2.80e-37 140.0
Tamo4g01529 . 321 413 Core DNA Replication Machinery family AT1G07270 60.215 3.07e-31 113.0
Tamo4g02139 . 1 393 Core DNA Replication Machinery family AT1G79150 54.094 1.11e-135 408.0
Tamo4g03127 . 245 341 Core DNA Replication Machinery family AT4G14700 32.323 7.80e-10 56.2
Tamo4g03447 . 8 174 Core DNA Replication Machinery family AT1G26840 44.311 9.62e-34 119.0
Tamo4g03580 . 934 1116 Core DNA Replication Machinery family AT1G08840 29.358 1.03e-11 66.2
Tamo4g03586 . 454 538 Core DNA Replication Machinery family AT5G08020 67.059 3.26e-38 133.0
Tamo4g03852 . 447 590 Core DNA Replication Machinery family AT5G63960 25.17 3.98e-06 48.1
Tamo4g03853 . 666 882 Core DNA Replication Machinery family AT5G63960 33.79 2.98e-31 119.0
Tamo4g03971 . 13 235 Core DNA Replication Machinery family AT1G21690 27.984 5.36e-14 72.0
Tamo4g04004 . 887 1269 Core DNA Replication Machinery family AT1G08840 25.547 1.11e-23 106.0
Tamo5g00075 . 215 562 Core DNA Replication Machinery family AT2G31270 35.393 1.08e-45 160.0
Tamo5g00165 . 1 727 Core DNA Replication Machinery family AT2G07690 77.52 0.0 1167.0
Tamo5g00311 . 6 278 Core DNA Replication Machinery family AT3G02920 47.331 8.53e-87 258.0
Tamo5g00350 . 212 778 Core DNA Replication Machinery family AT1G08130 25.608 1.44e-31 131.0
Tamo5g00579 . 1 106 Core DNA Replication Machinery family AT4G18590 66.038 6.94e-52 157.0
Tamo5g00875 . 1 596 Core DNA Replication Machinery family AT3G25100 71.833 0.0 843.0
Tamo5g00888 . 1 596 Core DNA Replication Machinery family AT3G25100 71.833 0.0 843.0
Tamo5g00961 . 472 556 Core DNA Replication Machinery family AT5G61000 32.941 1.41e-07 47.8
Tamo5g01146 . 8 369 Core DNA Replication Machinery family AT4G02110 46.667 1.43e-95 321.0
Tamo5g01610 . 489 587 Core DNA Replication Machinery family AT5G61000 30.0 6.59e-09 50.1
Tamo5g02122 . 258 430 Core DNA Replication Machinery family AT2G06510 23.333 8.80e-08 50.4
Tamo5g02195 . 1 220 Core DNA Replication Machinery family AT5G49010 55.752 2.00e-84 248.0
Tamo5g02311 . 151 260 Core DNA Replication Machinery family AT5G26680 29.73 8.52e-09 55.1
Tamo5g02470 . 347 465 Core DNA Replication Machinery family AT4G19130 27.642 8.00e-07 45.1
Tamo5g02539 . 281 544 Core DNA Replication Machinery family AT1G08130 70.076 4.53e-130 385.0
Tamo5g02957 . 169 397 Core DNA Replication Machinery family AT5G08020 23.2 1.13e-10 60.1
Tamo5g02994 . 248 430 Core DNA Replication Machinery family AT5G08020 27.128 1.14e-09 56.6
Tamo5g03327 ACH 165 370 Core DNA Replication Machinery family AT5G08020 25.243 7.02e-15 72.0
Tamo5g03330 . 165 370 Core DNA Replication Machinery family AT5G08020 25.243 7.02e-15 72.0
Tamo5g03461 . 641 714 Core DNA Replication Machinery family AT5G45400 51.351 2.77e-20 87.0
Tamo5g04540 . 1141 1269 Core DNA Replication Machinery family AT1G08840 33.094 2.03e-12 63.2
Tamo6g00108 . 125 332 Core DNA Replication Machinery family AT1G63160 91.827 1.04e-142 399.0
Tamo6g00214 . 1 264 Core DNA Replication Machinery family AT2G01120 67.045 4.36e-127 369.0
Tamo6g00398 ACH 118 250 Core DNA Replication Machinery family AT5G22110 65.414 1.30e-57 189.0
Tamo6g00689 . 4 620 Core DNA Replication Machinery family AT1G67630 56.078 0.0 688.0
Tamo6g00775 . 166 370 Core DNA Replication Machinery family AT1G44900 78.673 1.17e-104 320.0
Tamo6g00856 . 1 369 Core DNA Replication Machinery family AT1G77470 57.258 4.03e-134 382.0
Tamo6g01523 . 1 296 Core DNA Replication Machinery family AT5G26680 23.642 2.15e-12 67.8
Tamo6g01567 . 465 564 Core DNA Replication Machinery family AT5G08020 33.654 2.72e-08 48.9
Tamo6g01688 . 24 241 Core DNA Replication Machinery family AT1G77470 23.346 2.95e-10 60.5
Tamo6g02004 . 424 564 Core DNA Replication Machinery family AT5G08020 27.083 3.58e-08 49.3
Tamo6g02060 . 451 588 Core DNA Replication Machinery family AT5G61000 26.619 4.41e-08 48.9
Tamo6g02158 . 187 593 Core DNA Replication Machinery family AT5G61000 24.7 7.15e-18 84.3
Tamo6g02159 . 472 587 Core DNA Replication Machinery family AT5G61000 31.092 1.62e-07 48.1
Tamo6g02190 . 641 683 Core DNA Replication Machinery family AT5G45400 46.512 9.37e-08 49.3
Tamo6g02606 . 151 260 Core DNA Replication Machinery family AT5G26680 29.73 3.85e-09 53.5
Tamo6g02755 . 198 384 Core DNA Replication Machinery family AT5G08020 26.154 1.51e-09 58.9
Tamo6g03271 . 472 559 Core DNA Replication Machinery family AT5G61000 31.461 4.07e-07 46.2
Tamo6g03457 . 249 275 Core DNA Replication Machinery family AT1G67630 66.667 3.80e-06 43.1
Tamo6g03703 . 19 260 Core DNA Replication Machinery family AT5G26680 27.459 4.43e-18 85.1
Tamo6g03793 . 231 275 Core DNA Replication Machinery family AT2G07690 77.083 1.60e-16 76.6
Tamo7g00003 . 4 534 Core DNA Replication Machinery family AT4G29910 56.425 0.0 576.0
Tamo7g00095 . 4 412 Core DNA Replication Machinery family AT4G29910 52.657 7.38e-148 428.0
Tamo7g00174 . 489 559 Core DNA Replication Machinery family AT5G61000 34.722 9.72e-07 45.4
Tamo7g00242 . 472 588 Core DNA Replication Machinery family AT5G61000 27.119 1.07e-06 47.0
Tamo7g00263 . 151 260 Core DNA Replication Machinery family AT5G26680 28.829 1.84e-08 53.9
Tamo7g00305 . 2 349 Core DNA Replication Machinery family AT5G27740 33.611 2.46e-59 201.0
Tamo7g00809 . 1 196 Core DNA Replication Machinery family AT5G26680 26.02 7.85e-12 61.2
Tamo7g00963 . 472 559 Core DNA Replication Machinery family AT5G61000 35.227 2.06e-08 49.3
Tamo7g01033 . 1 587 Core DNA Replication Machinery family AT5G46280 75.169 0.0 923.0
Tamo7g01215 . 357 669 Core DNA Replication Machinery family AT4G19130 25.364 1.46e-07 51.6
Tamo7g01346 . 322 525 Core DNA Replication Machinery family AT5G08020 27.111 1.33e-09 55.8
Tamo7g01472 . 339 538 Core DNA Replication Machinery family AT5G45400 23.944 3.93e-11 60.8
Tamo7g01790 ACH 184 269 Core DNA Replication Machinery family AT1G77320 39.56 2.42e-10 61.6
Tamo7g02082 . 489 559 Core DNA Replication Machinery family AT5G61000 34.211 3.47e-06 43.1
Tamo7g02530 . 1 749 Core DNA Replication Machinery family AT4G19130 48.052 0.0 713.0
Tamo7g02533 . 1 119 Core DNA Replication Machinery family AT5G45400 38.843 3.08e-19 82.4
Tamo7g03287 . 311 454 Core DNA Replication Machinery family AT1G08840 63.194 8.05e-58 192.0
Tamo8g00139 . 145 578 Core DNA Replication Machinery family AT5G08020 22.991 3.55e-13 71.2
Tamo8g00148 . 311 972 Core DNA Replication Machinery family AT1G77320 42.433 3.91e-155 470.0
Tamo8g00326 . 1 601 Core DNA Replication Machinery family AT5G08020 67.541 0.0 873.0
Tamo8g00500 . 12 362 Core DNA Replication Machinery family AT2G37560 65.527 8.75e-175 488.0
Tamo8g00517 . 448 559 Core DNA Replication Machinery family AT5G61000 27.434 2.42e-07 47.0
Tamo8g01710 . 1 678 Core DNA Replication Machinery family AT1G08130 58.981 0.0 841.0
Tamo8g01970 . 489 559 Core DNA Replication Machinery family AT5G61000 37.5 1.52e-08 50.4
Tamo8g02168 . 1 183 Core DNA Replication Machinery family AT3G12530 64.481 1.81e-86 253.0
Tamo8g02294 . 424 526 Core DNA Replication Machinery family AT5G22110 77.67 6.25e-55 176.0
Tamo8g02578 . 198 507 Core DNA Replication Machinery family AT5G08020 23.692 1.44e-10 62.0
Tamo8g02641 . 1 275 Core DNA Replication Machinery family AT2G24490 44.326 2.90e-78 236.0
Tamo8g03015 . 489 546 Core DNA Replication Machinery family AT5G61000 36.207 5.46e-06 41.6
Tamo8g03050 . 647 739 Core DNA Replication Machinery family AT5G45400 48.387 7.24e-24 94.0
Tamo8g03586 . 245 337 Core DNA Replication Machinery family AT4G14700 29.032 6.80e-09 53.5
Tamo8g03644 . 145 578 Core DNA Replication Machinery family AT5G08020 24.017 7.38e-17 85.5
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Tamo BAH 8.3e-24 No_clan TR PHD